| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is ycjM [H]
Identifier: 187730931
GI number: 187730931
Start: 1411640
End: 1411783
Strand: Direct
Name: ycjM [H]
Synonym: SbBS512_E1545
Alternate gene names: 187730931
Gene position: 1411640-1411783 (Clockwise)
Preceding gene: 187733036
Following gene: 187730331
Centisome position: 30.58
GC content: 41.67
Gene sequence:
>144_bases ATGGGATCGCTACCACTGAAAGGCAACATGAAACAGAAAATTACTGATTACCTGGACGAAATCTACGGTGGAACATTTAC CGCAACTCATTTACAGAAACTTGTAACGCGTCTTGAGGGTAATGCTGCCAACTTACTGATTTAG
Upstream 100 bases:
>100_bases CACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACTCTTGTGCTCAATTGACAGTTTATTTTCT GCGGAGTAGTCTCTCGTTTC
Downstream 100 bases:
>100_bases TGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGG TGCGTAACGGCAAAAGCACT
Product: putative sucrose phosphorylase
Products: NA
Alternate protein names: Sucrose glucosyltransferase [H]
Number of amino acids: Translated: 47; Mature: 46
Protein sequence:
>47_residues MGSLPLKGNMKQKITDYLDEIYGGTFTATHLQKLVTRLEGNAANLLI
Sequences:
>Translated_47_residues MGSLPLKGNMKQKITDYLDEIYGGTFTATHLQKLVTRLEGNAANLLI >Mature_46_residues GSLPLKGNMKQKITDYLDEIYGGTFTATHLQKLVTRLEGNAANLLI
Specific function: Unknown
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sucrose phosphorylase family [H]
Homologues:
Organism=Escherichia coli, GI87081873, Length=30, Percent_Identity=100, Blast_Score=67, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006047 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR016377 [H]
Pfam domain/function: PF00128 Alpha-amylase [H]
EC number: =2.4.1.7 [H]
Molecular weight: Translated: 5179; Mature: 5048
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSLPLKGNMKQKITDYLDEIYGGTFTATHLQKLVTRLEGNAANLLI CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure GSLPLKGNMKQKITDYLDEIYGGTFTATHLQKLVTRLEGNAANLLI CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]