Definition Shigella boydii CDC 3083-94 chromosome, complete genome.
Accession NC_010658
Length 4,615,997

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The map label for this gene is ynbB [H]

Identifier: 187730902

GI number: 187730902

Start: 1481219

End: 1481527

Strand: Direct

Name: ynbB [H]

Synonym: SbBS512_E1628

Alternate gene names: 187730902

Gene position: 1481219-1481527 (Clockwise)

Preceding gene: 187731611

Following gene: 187730373

Centisome position: 32.09

GC content: 45.31

Gene sequence:

>309_bases
TTGGAGTCATTACCGCTTATCGGTTTTAATTGCTTTGAGCTGTTTCTGTTATTAATACCTTTGGCTGGGTTTCTGATATT
AGCCACCTGGCGAGTTTTTGTGGGTGACCCCTCCGGTTTTCTGCATACCGTGAGCGCCATTTTTTGGGGCTGGATAATGA
CCGTTTTCGCCTTGAGTCATGCCGCCTGGTTATTAATGTTGCCATCCATGAATATCCAGGGCGGGGCCTTACTGGTGTTA
TTTCTTTTGGCATTAACCGCGTCAAACGATATTGCACAGTATTTATGGGTAATGCTGCCAACTTACTGA

Upstream 100 bases:

>100_bases
CTGGCAAGGCTGGGACGGAAGTCACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTATCTGAA
CATAAAACACTATCAGTAAG

Downstream 100 bases:

>100_bases
TTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGG
CGTGGTGCGTAACGGCAAAA

Product: hypothetical protein

Products: diphosphate; CDPdiacylglycerol

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPSMNIQGGALLVL
FLLALTASNDIAQYLWVMLPTY

Sequences:

>Translated_102_residues
MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPSMNIQGGALLVL
FLLALTASNDIAQYLWVMLPTY
>Mature_102_residues
MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPSMNIQGGALLVL
FLLALTASNDIAQYLWVMLPTY

Specific function: Unknown

COG id: COG4589

COG function: function code R; Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CDS family [H]

Homologues:

Organism=Escherichia coli, GI1787677, Length=91, Percent_Identity=92.3076923076923, Blast_Score=148, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000374 [H]

Pfam domain/function: PF01148 CTP_transf_1 [H]

EC number: 2.7.7.41

Molecular weight: Translated: 11377; Mature: 11377

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
AAWLLMLPSMNIQGGALLVLFLLALTASNDIAQYLWVMLPTY
HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
AAWLLMLPSMNIQGGALLVLFLLALTASNDIAQYLWVMLPTY
HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: CTP; phosphatidate

Specific reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]