| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is uxuB
Identifier: 187730805
GI number: 187730805
Start: 4465106
End: 4466566
Strand: Reverse
Name: uxuB
Synonym: SbBS512_E4791
Alternate gene names: 187730805
Gene position: 4466566-4465106 (Counterclockwise)
Preceding gene: 187730799
Following gene: 187732446
Centisome position: 96.76
GC content: 57.36
Gene sequence:
>1461_bases ATGACTACTATTGTTGACAGCAATCTGCCGGTTGCCCGCCCGTCATGGGATCATTCTCGTCTGGAATCACGCATTGTGCA TCTCGGTTGCGGGGCGTTTCACCGCGCACATCAGGCGCTGTATACCCATCATCTGCTGGAAAGCACCGACAGCGACTGGG GCATCTGCGAAGTTAACCTGATGCCAGGCAACGACCGCGTGCTGATCGAAAACCTGAAAAAACAGCAACTGCTGTACACC GTAGCGGAAAAAGGCGCAGAAAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGACGG CTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGAAAAAGGCTACTGCG CTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTAGAAAACCCGACTGCGCCGAAGTCC GCGATTGGTTACATCGTCGAAGCCTTGCGTCTGCGTCGTGAAAAAGGGCTGAAAGCATTTACGGTGATGTCCTGCGATAA CGTGCGTGAAAACGGTCATGTGGCGAAGGTCGCGGTACTGGGGCTGGCTCAGGCACGTGACCCGCAGCTGGCGGCATGGA TTGAAGAGAACGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATT GCTGATCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGT TAATGGTCGCCCGGACTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTA TGCTGAACGGCAGCCACTCTTTCCTGGCATACCTCGGTTACCTCGGCGGCTATGAAACTATTGCCGACACCATGACTAAC CCGGATTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCTATGCCGGAGGGTACGGACCT GAAGGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCAACCCGTCTCTGCGTCACCGTACCTGGCAGATTGCGATGGACG GCAGCCAGAAGTTACCGCAGCGTCTGCTGGACCCGGTGCGTCTGCACCTGCAAAACGGCGGCAGCTGGCGTCACCTGGCG CTGGGCGTGGCTGGCTGGATGCGTTACACCCAGGGCGTGGATGAGCAGGGTAATGCCATTGACGTGGTCGACCCGATGCT GGCCGAGTTCCAGAAGATTAACGCGCAGTATCAGGGCGCAGACCGCGTGAAAGCGCTGCTGGGCCTGAGCGGTATTTTTG CCGATGATCTGCCGCAGAATGCCGACTTTGTTGGCGCGGTGACGGCGGCATATCAGCAGCTGTGCGAACGCGGTGCGCGC GAGTGTGTGGCTGCGCTGTAA
Upstream 100 bases:
>100_bases GCGCTTTCTTTAGCCGTTAATATCCACCGGCATGGCTGCGCGCCGTGCCGGTTCCTTCTTCCTTGCCGTCACTCTCTGAA GACGGATTCTGGAGTTTACG
Downstream 100 bases:
>100_bases CTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTGCCCACCTGTA CGTGCCAACTTCCAGTGCTA
Product: fructuronate reductase
Products: NA
Alternate protein names: Fructuronate reductase [H]
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHHLLESTDSDWGICEVNLMPGNDRVLIENLKKQQLLYT VAEKGAESTELKIIGSMKEALHPEIDGCEGILNAMARPQTAIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKS AIGYIVEALRLRREKGLKAFTVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENVTFPCTMVDRIVPAATPETLQEI ADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKVGAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYETIADTMTN PDYRKAAFALMMQEQAPTLSMPEGTDLKAYATLLIERFSNPSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQNGGSWRHLA LGVAGWMRYTQGVDEQGNAIDVVDPMLAEFQKINAQYQGADRVKALLGLSGIFADDLPQNADFVGAVTAAYQQLCERGAR ECVAAL
Sequences:
>Translated_486_residues MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHHLLESTDSDWGICEVNLMPGNDRVLIENLKKQQLLYT VAEKGAESTELKIIGSMKEALHPEIDGCEGILNAMARPQTAIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKS AIGYIVEALRLRREKGLKAFTVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENVTFPCTMVDRIVPAATPETLQEI ADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKVGAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYETIADTMTN PDYRKAAFALMMQEQAPTLSMPEGTDLKAYATLLIERFSNPSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQNGGSWRHLA LGVAGWMRYTQGVDEQGNAIDVVDPMLAEFQKINAQYQGADRVKALLGLSGIFADDLPQNADFVGAVTAAYQQLCERGAR ECVAAL >Mature_485_residues TTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHHLLESTDSDWGICEVNLMPGNDRVLIENLKKQQLLYTV AEKGAESTELKIIGSMKEALHPEIDGCEGILNAMARPQTAIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKSA IGYIVEALRLRREKGLKAFTVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENVTFPCTMVDRIVPAATPETLQEIA DQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKVGAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYETIADTMTNP DYRKAAFALMMQEQAPTLSMPEGTDLKAYATLLIERFSNPSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQNGGSWRHLAL GVAGWMRYTQGVDEQGNAIDVVDPMLAEFQKINAQYQGADRVKALLGLSGIFADDLPQNADFVGAVTAAYQQLCERGARE CVAAL
Specific function: Hexuronate conversion to KDG. [C]
COG id: COG0246
COG function: function code G; Mannitol-1-phosphate/altronate dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannitol dehydrogenase family. UxuB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790779, Length=486, Percent_Identity=99.3827160493827, Blast_Score=1006, Evalue=0.0, Organism=Escherichia coli, GI1788497, Length=485, Percent_Identity=56.0824742268041, Blast_Score=555, Evalue=1e-159, Organism=Escherichia coli, GI1787823, Length=472, Percent_Identity=58.2627118644068, Blast_Score=552, Evalue=1e-158, Organism=Escherichia coli, GI48994885, Length=493, Percent_Identity=25.5578093306288, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1790028, Length=252, Percent_Identity=28.1746031746032, Blast_Score=89, Evalue=8e-19, Organism=Saccharomyces cerevisiae, GI6324401, Length=476, Percent_Identity=39.4957983193277, Blast_Score=359, Evalue=1e-100, Organism=Saccharomyces cerevisiae, GI6320765, Length=476, Percent_Identity=39.4957983193277, Blast_Score=359, Evalue=1e-100,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR013328 - InterPro: IPR000669 - InterPro: IPR013118 - InterPro: IPR023027 - InterPro: IPR013131 - InterPro: IPR016040 [H]
Pfam domain/function: PF01232 Mannitol_dh; PF08125 Mannitol_dh_C [H]
EC number: =1.1.1.57 [H]
Molecular weight: Translated: 53671; Mature: 53540
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00974 MANNITOL_DHGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHHLLESTDSDWGICEVNL CCEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE MPGNDRVLIENLKKQQLLYTVAEKGAESTELKIIGSMKEALHPEIDGCEGILNAMARPQT ECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCHHHHHHHHHCCCCE AIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKSAIGYIVEALRLRREKGLKAF EEEEEEEECCCCCCCCCCCCEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE TVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENVTFPCTMVDRIVPAATPETLQEI EEEECCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHH ADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKVGAQFVADVVPFEMMKLRMLNGSHS HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH FLAYLGYLGGYETIADTMTNPDYRKAAFALMMQEQAPTLSMPEGTDLKAYATLLIERFSN HHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC PSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQNGGSWRHLALGVAGWMRYTQGVDEQGNAI CCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCEE DVVDPMLAEFQKINAQYQGADRVKALLGLSGIFADDLPQNADFVGAVTAAYQQLCERGAR CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH ECVAAL HHHHCC >Mature Secondary Structure TTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHHLLESTDSDWGICEVNL CEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE MPGNDRVLIENLKKQQLLYTVAEKGAESTELKIIGSMKEALHPEIDGCEGILNAMARPQT ECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCHHHHHHHHHCCCCE AIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKSAIGYIVEALRLRREKGLKAF EEEEEEEECCCCCCCCCCCCEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE TVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENVTFPCTMVDRIVPAATPETLQEI EEEECCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHH ADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKVGAQFVADVVPFEMMKLRMLNGSHS HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH FLAYLGYLGGYETIADTMTNPDYRKAAFALMMQEQAPTLSMPEGTDLKAYATLLIERFSN HHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC PSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQNGGSWRHLALGVAGWMRYTQGVDEQGNAI CCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCEE DVVDPMLAEFQKINAQYQGADRVKALLGLSGIFADDLPQNADFVGAVTAAYQQLCERGAR CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH ECVAAL HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]