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The map label for this gene is yncB [H]

Identifier: 187730528

GI number: 187730528

Start: 1559642

End: 1560679

Strand: Direct

Name: yncB [H]

Synonym: SbBS512_E1719

Alternate gene names: 187730528

Gene position: 1559642-1560679 (Clockwise)

Preceding gene: 187731664

Following gene: 187733862

Centisome position: 33.79

GC content: 52.41

Gene sequence:

>1038_bases
ATGGGGCAACAAAAGCAGCGTAATCGACGTTGGGTTCTGGCCTCGCGTCCACATGGCGCACCGGTTCCGGAGAATTTCCG
TCTTGAAGAAGATGATGTCGCCACACCGGGTGAAGGACAGGTGTTACTGCGCACAGTTTATTTGTCCCTGGACCCGTATA
TGCGTGGACGTATGAGCGATGAGCCATCTTATTCACCGCCTGTTGATATTGGCGGCGTGATGGTCGGCGGCACGGTGAGC
CATGTTGTGGAGTCGAATCATCCTGATTATCAGCCTGGCGACTGGGTGCTGGGCTACAGTGGATGGCAGGACTATGACAT
ATCCAGTGGTGATGATCTGGTGAAACTTGGCGATCATCCGCAAAATCCATCGTGGTCGCTGGGTGTGCTGGGGATGCCAG
GCTTTACCGCTTATATGGGGCTGCTGGATATCGGTCAGCCTAAAGAGGGCGAAACGTTGGTGGTAGCTGCGGCGACAGGT
CCTGTGGGAGCAACGGTGGGGCAAATCGGCAAACTTAAAGGTTGCAGGGTGGTGGGGGGTGCCGGTGGCGCGGAAAAATG
CCGCCATGCTATCGAGGTGCTGGGCTTCGATGTTTGTCTTGATCACCACGCGGGTGATTTTGCCGAACAACTGGTGAAAG
CGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTTGATGCAGTGCTACCATTACTTAATACA
TCTGCGCGCATTCCCGTTTGTGGCTTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCCCT
GTTGATGGCAACGGTGCTGAAAAAACGTATTCGCTTGCAAGGGTTTATTATCGCTCAGGATTATGGTCACCGCATCCATG
AGTTTCAGAAGGAGATGGGGCAATGGGTGAAAGAGGATAAAATCCACTACCACGAAGATATTACTGATGGTTTAGAGAAT
GCGCCACAGACGTTTATCGGCCTGCTGAAGGGTAAAAACTTCGGCAAAGTGGTGATCCGCGTCGCGGGTGATGATTAA

Upstream 100 bases:

>100_bases
TTATTGCGTGTTGCAGAGGGGATGTGACGGCTGCAAACAAAACCAATCCCGTGAGCCTGCTACTATTGATGGATTCATGC
CAAAAGCACAGGAGAGCATT

Downstream 100 bases:

>100_bases
AGTTTCAACGGCGGCGTAAGCCGCCATAAAAATCCAGGCAAAAAGCTTATTTTCAGCTTTAATTAACTAACCACGTCATT
GTTCTGCTGCTAATAACAAC

Product: oxidoreductase, zinc-binding dehydrogenase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVS
HVVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
PVGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKGIDIYYENVGGKVFDAVLPLLNT
SARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQKEMGQWVKEDKIHYHEDITDGLEN
APQTFIGLLKGKNFGKVVIRVAGDD

Sequences:

>Translated_345_residues
MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVS
HVVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
PVGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKGIDIYYENVGGKVFDAVLPLLNT
SARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQKEMGQWVKEDKIHYHEDITDGLEN
APQTFIGLLKGKNFGKVVIRVAGDD
>Mature_344_residues
GQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSH
VVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGP
VGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKGIDIYYENVGGKVFDAVLPLLNTS
ARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQKEMGQWVKEDKIHYHEDITDGLENA
PQTFIGLLKGKNFGKVVIRVAGDD

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=338, Percent_Identity=38.1656804733728, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI226059133, Length=338, Percent_Identity=38.1656804733728, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI226246682, Length=350, Percent_Identity=37.4285714285714, Blast_Score=215, Evalue=5e-56,
Organism=Homo sapiens, GI226246680, Length=350, Percent_Identity=37.4285714285714, Blast_Score=215, Evalue=5e-56,
Organism=Homo sapiens, GI22748929, Length=350, Percent_Identity=37.4285714285714, Blast_Score=215, Evalue=5e-56,
Organism=Homo sapiens, GI226056130, Length=311, Percent_Identity=36.9774919614148, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI28557745, Length=341, Percent_Identity=28.4457478005865, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI194239674, Length=239, Percent_Identity=28.8702928870293, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI13236495, Length=239, Percent_Identity=28.8702928870293, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI226510941, Length=345, Percent_Identity=97.3913043478261, Blast_Score=688, Evalue=0.0,
Organism=Caenorhabditis elegans, GI133901712, Length=358, Percent_Identity=32.6815642458101, Blast_Score=165, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI133901710, Length=358, Percent_Identity=32.6815642458101, Blast_Score=165, Evalue=3e-41,
Organism=Saccharomyces cerevisiae, GI6323504, Length=372, Percent_Identity=27.4193548387097, Blast_Score=119, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37480; Mature: 37349

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSD
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHCCCCC
EPSYSPPVDIGGVMVGGTVSHVVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHP
CCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCC
QNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGG
CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEC
AGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKGIDIYYENVGGKVFDAVLPLLNT
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCC
SARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQKEMG
CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHH
QWVKEDKIHYHEDITDGLENAPQTFIGLLKGKNFGKVVIRVAGDD
HHHHHCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure 
GQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSD
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHCCCCC
EPSYSPPVDIGGVMVGGTVSHVVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHP
CCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCC
QNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGG
CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEC
AGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKGIDIYYENVGGKVFDAVLPLLNT
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCC
SARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQKEMG
CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHH
QWVKEDKIHYHEDITDGLENAPQTFIGLLKGKNFGKVVIRVAGDD
HHHHHCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]