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The map label for this gene is ydhJ [H]

Identifier: 187730304

GI number: 187730304

Start: 1678575

End: 1679432

Strand: Direct

Name: ydhJ [H]

Synonym: SbBS512_E1836

Alternate gene names: 187730304

Gene position: 1678575-1679432 (Clockwise)

Preceding gene: 187730276

Following gene: 187733044

Centisome position: 36.36

GC content: 49.88

Gene sequence:

>858_bases
ATGTCAATTAAAACAATTAAGTATTTCTCAACAATCATTGTAGCGATAGTTGCGGTTCTTGCCGGATGGTGGCTGTGGAA
TTATTACATGCAATCTCCGTGGACACGCGACGGGAAAATACGCGCAGAAAAGGTTTCTATCACCCCACAGGTGTCGGGAC
GTATTGTTGAGCTGAATATAAAAGACAACCAACTGGTTAACGCGGGGGATCTTCTGCTCACGATCGATAAAACGCCCTTT
CAGATCGCCGAGCTGAACGCACAGGCTCAGCTGGCGAAAGCGCAATCTGACCTCGCAAAAGCCAATAACGAAGCGAATCG
TCGTCGTCATCTCTCACAAAATTTTATTTCTGCCGAAGAACTCGATACCGCTAACCTCAATGTTAAAGCGATGCAGGCCA
GTGTTAATGCCGCACAGGCCACGCTGAAACAGACACAATGGCAACTGGCGCAAACGGAAATTCGCGCCCCGGTGAGTGGT
TGGGTGACTAACCTCACTACCCGCATCGGCGATTACGCTGACACCGGGAAACCGCTGTTTGCCCTTGTCGACAGCCACTC
GTTTTACGTCATTGGTTATTTTGAAGAAACCAAGTTGCGCCATATCCGCGAAGGTGCACCAGCACAAATTACCCTCTATA
GTGATAACAAAACGTTACGGGGTCACGTTTCCAGTATCGGTCGGGCGATTTATGATCAAAGCGTTGAAAGTGACTCAAGC
CTTATTCCGGATGTGAAACCTAACGTCCCCTGGATTCGTCTCGCCCAACGCGTTCCCGTCCGCTTTGCGCTGGATAAAGT
TCCAGGCGATGTCACGCTGGTGTCGGGCACCACCTGTAGCATTGCCGTAGGTCAATAA

Upstream 100 bases:

>100_bases
GGATCTACGCCGGTGACATCTGGCATCCCTTGTAAATGGATTTATCGCTGTTTGCGATTTGCGTTTGCCTTGCTCTGGCA
ATACTGATTGCGTGGTAACT

Downstream 100 bases:

>100_bases
TGAACGCATCGTCATGGTCCTTGCGCAATTTGCCCTGGTTCAAGGCCACGCTGGCGCAATGGCGTTATGCGTTACGCAAT
ACCATTGCCATGTGTCTGGC

Product: auxiliary transport protein, membrane fusion protein (MFP) family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEKVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPF
QIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSG
WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLRGHVSSIGRAIYDQSVESDSS
LIPDVKPNVPWIRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ

Sequences:

>Translated_285_residues
MSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEKVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPF
QIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSG
WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLRGHVSSIGRAIYDQSVESDSS
LIPDVKPNVPWIRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
>Mature_284_residues
SIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEKVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQ
IAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSGW
VTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLRGHVSSIGRAIYDQSVESDSSL
IPDVKPNVPWIRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=285, Percent_Identity=97.8947368421053, Blast_Score=577, Evalue=1e-166,
Organism=Escherichia coli, GI1789637, Length=282, Percent_Identity=40.4255319148936, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1790519, Length=293, Percent_Identity=32.4232081911263, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1788711, Length=311, Percent_Identity=27.9742765273312, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789041, Length=304, Percent_Identity=28.2894736842105, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082036, Length=161, Percent_Identity=29.8136645962733, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790012, Length=269, Percent_Identity=24.1635687732342, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790024, Length=254, Percent_Identity=24.8031496062992, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789929, Length=130, Percent_Identity=34.6153846153846, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 31581; Mature: 31450

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEKVSITPQVSGRIVELNI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
KDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEE
CCCCEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH
LDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLF
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEE
ALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLRGHVSSIGRAIYDQSVESDSS
EEEECCCEEEEEEECHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
LIPDVKPNVPWIRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
CCCCCCCCCCHHHHHHHCCEEEEEECCCCCEEEEECCEEEEEECC
>Mature Secondary Structure 
SIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEKVSITPQVSGRIVELNI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
KDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEE
CCCCEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH
LDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLF
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEE
ALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLRGHVSSIGRAIYDQSVESDSS
EEEECCCEEEEEEECHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
LIPDVKPNVPWIRLAQRVPVRFALDKVPGDVTLVSGTTCSIAVGQ
CCCCCCCCCCHHHHHHHCCEEEEEECCCCCEEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]