| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is kptA
Identifier: 187730292
GI number: 187730292
Start: 4455773
End: 4456327
Strand: Reverse
Name: kptA
Synonym: SbBS512_E4774
Alternate gene names: 187730292
Gene position: 4456327-4455773 (Counterclockwise)
Preceding gene: 187733510
Following gene: 187731231
Centisome position: 96.54
GC content: 50.81
Gene sequence:
>555_bases ATGGCAAAGCACAACGAAAAAGAGCTGGCGGATACGAGCAAGTTTTTAAGTTTTGTCCTCCGACACAAACCGGAGGCGAT TGGTATCGTACTGGACCGTGAAGGATGGGCGGATATCGATAAGCTCATACTTTGTGCCCAAAAAGCGGGCAAGCGATTAA CCCGTGCATTGCTGGATACCGTGGTCGCAACCAGCGATAAAAAGCGTTTTAGTTATTCCAGTGATGGTAGGTGCATCCGC GCGGTTCAGGGGCATTCGACTTCGCAGGTCGCTATTTCCTTTGCCGAAAAAACACCGCCACAGTTTCTCTACCACGGTAC GGCAAGCCGTTTCCTTGACGAGATAAAAAAACAGGGGCTGATTGCAGGGGATCGTCATTACGTGCATCTCTCTGCTGATG AAGCAACGGCACGCAAAGTGGGAGCAAGACACGGATCGCCGGTTGTCTTAACCGTCAAAGCACAGGAAATGGCGAAACGA GGCATTCCTTTCTGGCAAGCGGAAAACGGAGTCTGGCTGACATCAACGGTTGCGGTCGAATTTCTTGAGTGGTAA
Upstream 100 bases:
>100_bases GTGGAAAAGGTTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCCAGTGACAATGACATTGGTAAATAAAAACAGAA AATCCAGGGACGAAAACGAG
Downstream 100 bases:
>100_bases GGGAAACACTCCTCATGAAGTGACCACTTGCAGCTTAAATAATTGTACTGTGCTGATAAGCGCAGCAATAAACAACGCCG CCGCGCCGCAGAGAGTGGCG
Product: RNA 2'-phosphotransferase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIR AVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGLIAGDRHYVHLSADEATARKVGARHGSPVVLTVKAQEMAKR GIPFWQAENGVWLTSTVAVEFLEW
Sequences:
>Translated_184_residues MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIR AVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGLIAGDRHYVHLSADEATARKVGARHGSPVVLTVKAQEMAKR GIPFWQAENGVWLTSTVAVEFLEW >Mature_183_residues AKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIRA VQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGLIAGDRHYVHLSADEATARKVGARHGSPVVLTVKAQEMAKRG IPFWQAENGVWLTSTVAVEFLEW
Specific function: Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP- ribosy
COG id: COG1859
COG function: function code J; RNA:NAD 2'-phosphotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the kptA/TPT1 family [H]
Homologues:
Organism=Escherichia coli, GI87082424, Length=184, Percent_Identity=97.8260869565217, Blast_Score=375, Evalue=1e-105,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022928 - InterPro: IPR002745 [H]
Pfam domain/function: PF01885 PTS_2-RNA [H]
EC number: 2.7.-.- [C]
Molecular weight: Translated: 20476; Mature: 20344
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH VVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGL HHHCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHEECCHHHHHHHHHHHCCC IAGDRHYVHLSADEATARKVGARHGSPVVLTVKAQEMAKRGIPFWQAENGVWLTSTVAVE EECCCEEEEEECCHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCCEECCCCEEEEHHHHHH FLEW HHCC >Mature Secondary Structure AKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH VVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGL HHHCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHEECCHHHHHHHHHHHCCC IAGDRHYVHLSADEATARKVGARHGSPVVLTVKAQEMAKRGIPFWQAENGVWLTSTVAVE EECCCEEEEEECCHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCCEECCCCEEEEHHHHHH FLEW HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA