| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is yhiD [H]
Identifier: 187730082
GI number: 187730082
Start: 3633058
End: 3633705
Strand: Reverse
Name: yhiD [H]
Synonym: SbBS512_E3906
Alternate gene names: 187730082
Gene position: 3633705-3633058 (Counterclockwise)
Preceding gene: 187730547
Following gene: 187731022
Centisome position: 78.72
GC content: 44.91
Gene sequence:
>648_bases ATGACAGCAGAATTTATTATACGTCTTATACTCGCGGCAATTGCCTGTGGCGCTATTGGCATGGAAAGGCAAATGCGAGG CAAAGGAGCAGGGTTACGCACACATGTATTAATTGGCATGGGAAGCGCCCTGTTTATGATTGTTTCGAAATATGGTTTTG CTGACGTGCTGTCTTTAGATCACGTCGGACTCGACCCCAGCCGTATTGCTGCTCAGGTGGTGACGGGCGTCGGGTTTATC GGTGCAGGTAACATTCTCGTTCGTAACCAAAATATTGTAGGTTTGACGACGGCAGCGGATATCTGGATGACCGCCGCTAT AGGTATGGTTATTGGCAGTGGTATGTACGAATTGGGTATGTATGGTTCAGTGATGACCTTGCTGGTGCTGGAAGTCTTCC ATCAATTAACCTTCCGCCTGATGAACAAAAATTACCATTTACAGCTGACATTAGTGAACGGTAATACGGTATCAATGCTC GACTGGTTTAAGCAGCAAAAAATAAAAACGGATTTAGTTTCGTTGCAGGAAAATGAAGATCATGAAGTGGTCGCCATTGA TATCCAGCTTCATGCCACAACGTCGATAGAAGATCTGTTGCGATTATTAAAAGGTATGGCAGGGGTGAAAGGCGTTTCAA TTAGCTAA
Upstream 100 bases:
>100_bases CTTCAAAAATCAAGCATCTAATGACTTGCCGAATTAATGAGGTACAAGTAAAAAGGAGTAGCAAGTTGAGCCATCTTGCT GCTCCTTTTTGCATTTTTAT
Downstream 100 bases:
>100_bases TCTGTGTGGCAGCGTAGTCAGACTCACCGTAAGCCTGAAATTCACACCAGATAATCAATATGCTGATGGCGTACCAGCTC ATTGATCCGCTTAAGATTGA
Product: putative Mg(2+) transport ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MTAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSALFMIVSKYGFADVLSLDHVGLDPSRIAAQVVTGVGFI GAGNILVRNQNIVGLTTAADIWMTAAIGMVIGSGMYELGMYGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSML DWFKQQKIKTDLVSLQENEDHEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS
Sequences:
>Translated_215_residues MTAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSALFMIVSKYGFADVLSLDHVGLDPSRIAAQVVTGVGFI GAGNILVRNQNIVGLTTAADIWMTAAIGMVIGSGMYELGMYGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSML DWFKQQKIKTDLVSLQENEDHEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS >Mature_214_residues TAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSALFMIVSKYGFADVLSLDHVGLDPSRIAAQVVTGVGFIG AGNILVRNQNIVGLTTAADIWMTAAIGMVIGSGMYELGMYGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSMLD WFKQQKIKTDLVSLQENEDHEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS
Specific function: Unknown
COG id: COG1285
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MgtC/SapB family [H]
Homologues:
Organism=Escherichia coli, GI1789924, Length=215, Percent_Identity=99.0697674418605, Blast_Score=428, Evalue=1e-121,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003416 [H]
Pfam domain/function: PF02308 MgtC [H]
EC number: NA
Molecular weight: Translated: 23264; Mature: 23133
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSALFMIVSKYGFADVLSLD CCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHC HVGLDPSRIAAQVVTGVGFIGAGNILVRNQNIVGLTTAADIWMTAAIGMVIGSGMYELGM CCCCCHHHHHHHHHHHCCEEECCCEEEECCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHH YGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSMLDWFKQQKIKTDLVSLQENED HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHCCCCC HEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS CEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSALFMIVSKYGFADVLSLD CHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHC HVGLDPSRIAAQVVTGVGFIGAGNILVRNQNIVGLTTAADIWMTAAIGMVIGSGMYELGM CCCCCHHHHHHHHHHHCCEEECCCEEEECCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHH YGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSMLDWFKQQKIKTDLVSLQENED HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHCCCCC HEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS CEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]