Click here to switch to the map view.

The map label for this gene is ytfH [C]

Identifier: 187735190

GI number: 187735190

Start: 804969

End: 805334

Strand: Reverse

Name: ytfH [C]

Synonym: Amuc_0684

Alternate gene names: 187735190

Gene position: 805334-804969 (Counterclockwise)

Preceding gene: 187735195

Following gene: 187735181

Centisome position: 30.23

GC content: 40.71

Gene sequence:

>366_bases
ATGCACAAGGATATGACCTACGATGAATACAGGCATGAAGTGAAAGAGGGAATTTTGACTGAAGCGGGGAATTGTCCTGT
GACTCCACTTCTGCTTATGTTGCAGGGGAAATGGAAATTTCAAATCCTTTATGAATTGTTTATTCAAGATCCCATCCGCT
TTGGTGAGTTAAAAAAAAATATTAATGGTATTACAAATACCATGCTTGCCTCTTCCCTTCGAGAATTAGAAAAGGACGGG
CTTGTATCCAGAATGCAATTCAACGAGATACCGCCCCGTGTTGAATACTCTCTTACGGAAAAGGGGCAGGCATTGTTGCC
TGTATTCTATGAAATGACGAAGTGGGGATTTCAGTATATTCCGTAA

Upstream 100 bases:

>100_bases
AGTAAGATAATTATACTAAGGATAAAATTTTTTTCAAGTACGCATATTATTCTGACTCAGTACGGTTGACTATACTAATA
GAGAAAGGAAGGCATTTTTC

Downstream 100 bases:

>100_bases
ATACTTACTTACAAAAACGCATATGAAATATTTCCCTAAGCGCTTTCCCGCCAAAATCAGAAAGCTATATATTTAATTTT
GCAAACCAGCAGGAATGAAA

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MHKDMTYDEYRHEVKEGILTEAGNCPVTPLLLMLQGKWKFQILYELFIQDPIRFGELKKNINGITNTMLASSLRELEKDG
LVSRMQFNEIPPRVEYSLTEKGQALLPVFYEMTKWGFQYIP

Sequences:

>Translated_121_residues
MHKDMTYDEYRHEVKEGILTEAGNCPVTPLLLMLQGKWKFQILYELFIQDPIRFGELKKNINGITNTMLASSLRELEKDG
LVSRMQFNEIPPRVEYSLTEKGQALLPVFYEMTKWGFQYIP
>Mature_121_residues
MHKDMTYDEYRHEVKEGILTEAGNCPVTPLLLMLQGKWKFQILYELFIQDPIRFGELKKNINGITNTMLASSLRELEKDG
LVSRMQFNEIPPRVEYSLTEKGQALLPVFYEMTKWGFQYIP

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=111, Percent_Identity=34.2342342342342, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14205; Mature: 14205

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKDMTYDEYRHEVKEGILTEAGNCPVTPLLLMLQGKWKFQILYELFIQDPIRFGELKKN
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHH
INGITNTMLASSLRELEKDGLVSRMQFNEIPPRVEYSLTEKGQALLPVFYEMTKWGFQYI
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC
P
C
>Mature Secondary Structure
MHKDMTYDEYRHEVKEGILTEAGNCPVTPLLLMLQGKWKFQILYELFIQDPIRFGELKKN
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHH
INGITNTMLASSLRELEKDGLVSRMQFNEIPPRVEYSLTEKGQALLPVFYEMTKWGFQYI
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10086842; 11058132 [H]