| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734980
Identifier: 187734980
GI number: 187734980
Start: 561940
End: 562911
Strand: Direct
Name: 187734980
Synonym: Amuc_0473
Alternate gene names: NA
Gene position: 561940-562911 (Clockwise)
Preceding gene: 187734979
Following gene: 187734984
Centisome position: 21.09
GC content: 55.25
Gene sequence:
>972_bases ATGCTATTTTCACGCGGCCTCATCCGAACTTTCCTGGCTCTTCTGGCATTGGGGGCGATTCCCTTATCTGCAGAAGAACA GCCGCTTCCTGCTCAAGGCGGTCCCGTCGTGTCCATTACTGACCTGAAGCCCGTAAAGCTGGAGAGGGATGCTCACAGCA AGCTTCTTGTAGCGCAATGCACTGTCAATGGAGTCCCATGCAATCTTATTGTGGACACGGCGGCTTCCCACACCACATTT GATATCAAATTCATCAAAAAGAATTTTCCCGGCCTGCCGCTTGAAGACGTTCAAATAGCCCCTGGTTCCAACGTCCATGC CGTCCCCCGGCTATTTGCCATGCGGTCCTTCTCCATGGGAGGGCTTCATATCAAAAACTTCTTCGGCCTTGCCCTGGATC TTACTCCCCTGCAAAAGGACATGCAGGTGAAGATAGACGGCATCCTGGGCATCAACTACCTGGGGTTCTCTCCGTTCCTG CTGTCCGTCAGGAATGCTTCCCTGCAGTTTCTGGAACGCTCCCGCTTCCCCCAACACAGGAAACCGCTGGATGTGGAACG TGATCCTTCCGGAATTTTTTACATCCGCTGTTCCCGGGGGGGGGGAGATACTTTCCCGCTGGCTCTTGACTCCGGCTCTT CTCTTTCCATGGCCCCGCTGGAACAGTGGCCCGCAGATCCGAACGGCAATCAGCTCACCACCAAGGCAACCGACATTAAC GGACACAATGGGGACTGCACTGTCATGAAACTGGGTATCCCCTCCACGCTCCGCATGGGACCGGACTTCCAAATGGACGG CCTTTCCTTCGCCGTAACGGGAACAGGGGGCCGATACCAGATCGGCGTGGATACTTTCCAGCATTTTGACATCATCATTG ATGCTCCGCAGGGGGAAGTCTTCGCCCTTCCTCCCCATTCCAGGCCGGAGCCCCAGGGGCAAAAAGCCCCCGATATCAAA CAGGAATCTTGA
Upstream 100 bases:
>100_bases TGGAACTGGAACGCCGTCACAAACCCAACCACCGCAGCCATGACTGATTCGCCGTCAAAATTGGCTTGTCAAACTGCAAA AACACACCTAATGGTGAAGA
Downstream 100 bases:
>100_bases GCATGATGCAGATCATGCGAATGGTCCGGGCCGTAGCGCCGAAATGGGCCTTCAACGCCACCTGGGCGCGGGAAGACTGG GCATGAGCCAGCAGGGGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MLFSRGLIRTFLALLALGAIPLSAEEQPLPAQGGPVVSITDLKPVKLERDAHSKLLVAQCTVNGVPCNLIVDTAASHTTF DIKFIKKNFPGLPLEDVQIAPGSNVHAVPRLFAMRSFSMGGLHIKNFFGLALDLTPLQKDMQVKIDGILGINYLGFSPFL LSVRNASLQFLERSRFPQHRKPLDVERDPSGIFYIRCSRGGGDTFPLALDSGSSLSMAPLEQWPADPNGNQLTTKATDIN GHNGDCTVMKLGIPSTLRMGPDFQMDGLSFAVTGTGGRYQIGVDTFQHFDIIIDAPQGEVFALPPHSRPEPQGQKAPDIK QES
Sequences:
>Translated_323_residues MLFSRGLIRTFLALLALGAIPLSAEEQPLPAQGGPVVSITDLKPVKLERDAHSKLLVAQCTVNGVPCNLIVDTAASHTTF DIKFIKKNFPGLPLEDVQIAPGSNVHAVPRLFAMRSFSMGGLHIKNFFGLALDLTPLQKDMQVKIDGILGINYLGFSPFL LSVRNASLQFLERSRFPQHRKPLDVERDPSGIFYIRCSRGGGDTFPLALDSGSSLSMAPLEQWPADPNGNQLTTKATDIN GHNGDCTVMKLGIPSTLRMGPDFQMDGLSFAVTGTGGRYQIGVDTFQHFDIIIDAPQGEVFALPPHSRPEPQGQKAPDIK QES >Mature_323_residues MLFSRGLIRTFLALLALGAIPLSAEEQPLPAQGGPVVSITDLKPVKLERDAHSKLLVAQCTVNGVPCNLIVDTAASHTTF DIKFIKKNFPGLPLEDVQIAPGSNVHAVPRLFAMRSFSMGGLHIKNFFGLALDLTPLQKDMQVKIDGILGINYLGFSPFL LSVRNASLQFLERSRFPQHRKPLDVERDPSGIFYIRCSRGGGDTFPLALDSGSSLSMAPLEQWPADPNGNQLTTKATDIN GHNGDCTVMKLGIPSTLRMGPDFQMDGLSFAVTGTGGRYQIGVDTFQHFDIIIDAPQGEVFALPPHSRPEPQGQKAPDIK QES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35042; Mature: 35042
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFSRGLIRTFLALLALGAIPLSAEEQPLPAQGGPVVSITDLKPVKLERDAHSKLLVAQC CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCEEEEEEE TVNGVPCNLIVDTAASHTTFDIKFIKKNFPGLPLEDVQIAPGSNVHAVPRLFAMRSFSMG ECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCC GLHIKNFFGLALDLTPLQKDMQVKIDGILGINYLGFSPFLLSVRNASLQFLERSRFPQHR CEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHCCCCCC KPLDVERDPSGIFYIRCSRGGGDTFPLALDSGSSLSMAPLEQWPADPNGNQLTTKATDIN CCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEECCHHHCCCCCCCCEEEEEEEECC GHNGDCTVMKLGIPSTLRMGPDFQMDGLSFAVTGTGGRYQIGVDTFQHFDIIIDAPQGEV CCCCCEEEEEECCCHHCCCCCCCEECCEEEEEECCCCEEEEECCCEEEEEEEEECCCCCE FALPPHSRPEPQGQKAPDIKQES EEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLFSRGLIRTFLALLALGAIPLSAEEQPLPAQGGPVVSITDLKPVKLERDAHSKLLVAQC CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCEEEEEEE TVNGVPCNLIVDTAASHTTFDIKFIKKNFPGLPLEDVQIAPGSNVHAVPRLFAMRSFSMG ECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCC GLHIKNFFGLALDLTPLQKDMQVKIDGILGINYLGFSPFLLSVRNASLQFLERSRFPQHR CEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHCCCCCC KPLDVERDPSGIFYIRCSRGGGDTFPLALDSGSSLSMAPLEQWPADPNGNQLTTKATDIN CCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEECCHHHCCCCCCCCEEEEEEEECC GHNGDCTVMKLGIPSTLRMGPDFQMDGLSFAVTGTGGRYQIGVDTFQHFDIIIDAPQGEV CCCCCEEEEEECCCHHCCCCCCCEECCEEEEEECCCCEEEEECCCEEEEEEEEECCCCCE FALPPHSRPEPQGQKAPDIKQES EEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA