| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is ssuA [C]
Identifier: 187734916
GI number: 187734916
Start: 489481
End: 490527
Strand: Reverse
Name: ssuA [C]
Synonym: Amuc_0409
Alternate gene names: 187734916
Gene position: 490527-489481 (Counterclockwise)
Preceding gene: 187734919
Following gene: 187734915
Centisome position: 18.41
GC content: 59.69
Gene sequence:
>1047_bases ATGACCCGTTCCAGATTCCTGATGATTTTACCGGCCCTGTTTTTATGCCTGCTGGCTGTTTCCTGCGGAAAGAAGGAGAA GGAAGATCCCAATGTCGTGGAGTTGAACTTCGGTCATTTTCCCAACGTGACACATGTGCAGGGCCTGGTGGCGCATCATT TTTCCCGGCAGGGGAAGGGGTGGTTTGAAGAACGGCTGAAGGAGGCTACCGGAAAGGATGTCAGGATCAACTGGTACGTG TACAATGCGGGCCCCAGCGCCATGGAAGCCGTGTTCGCCCGGTCCATTGAACTGGCTTATGTGGGGCCCAGCCCGGCCAT CAATGCGTTTGTGCGTTCCCGCGGGGAGGATATCAGGATGATTGCCGGAGCTGTGGAAGGAGGCGCCGCCCTGGTGGTTC CGAAGGATTCCTTGCTGAAGGAGCCTGCGGATTTCCGCGGCAAGGTGATTGCTACTCCCCAACTGGGGAATACGCAGGAT GTTTCCGCCCGCGCCTGGTTTTCCCGCGGCGGCCTGCATGTGACGCAGCGCGGCGGGGACGTGACGATTCTGCCGACTCC CAACCCCGAACAGCTCAGCCTGTTCCGGCAGGGCAAGCTGGACGGCGTGTGGACGGTGGAACCCTGGGTGAGCCGCCTGG TGCTGACGGCGGGAGGCAGGGTGCTGGTGGACGAGAAGGAGTCCATCGCGACCGTACTGGTATGCGGAGCGGAGTTTCTC AGGGAAAAGCCGGAGGTGGCGAAAGCCCTGGTGCAGGCGCATGAGGAACTGAACGAATGGATAAGGCTGCATCCGGATGA GGCCCAGTTAATCGTGGTCAGGGAGCTGGAGGAGCTGACGCATTCCAGAATAGACCCGGCATTGATTGCGGAGGCCTGGA AAAGCATTGTCATCAAGGACAGGATTTCCATTCCCAAGCTCCGGCAGTTTGTGCAGGACGCCCATCAGGCCGGATTTATG AAAGAGGTTCCGGATATAGGCGGCCTGGTGGTGCCGGAGGCGGCGGAGGAACAGTTGACCATGGCGAAGGAGGCGGGCGG AAGATGA
Upstream 100 bases:
>100_bases GTTGCCTTTGGCTTCTTGCCTCCGGCGGCTTCTTCTGCTAGTCGGTGCCTGAAAGGCCGCGGAAAAACGGCTGTGCCTCA GTATCCCATTCTTTTTGCTT
Downstream 100 bases:
>100_bases TTGCGGGTGCAGAACATTGCGGCCCCGGAGGCTGCAAGCTCCGTATTGCCGGCGTGAGCAAGGTGTTTGACGGGAGGCGC GGAAAGGTGGTGGCTCTGGA
Product: substrate-binding protein of aliphatic sulfonate ABC transporter
Products: NA
Alternate protein names: NLPA Lipoprotein; ABC-Type Sulfonate Import System Periplasmic Component; ABC Transporter
Number of amino acids: Translated: 348; Mature: 347
Protein sequence:
>348_residues MTRSRFLMILPALFLCLLAVSCGKKEKEDPNVVELNFGHFPNVTHVQGLVAHHFSRQGKGWFEERLKEATGKDVRINWYV YNAGPSAMEAVFARSIELAYVGPSPAINAFVRSRGEDIRMIAGAVEGGAALVVPKDSLLKEPADFRGKVIATPQLGNTQD VSARAWFSRGGLHVTQRGGDVTILPTPNPEQLSLFRQGKLDGVWTVEPWVSRLVLTAGGRVLVDEKESIATVLVCGAEFL REKPEVAKALVQAHEELNEWIRLHPDEAQLIVVRELEELTHSRIDPALIAEAWKSIVIKDRISIPKLRQFVQDAHQAGFM KEVPDIGGLVVPEAAEEQLTMAKEAGGR
Sequences:
>Translated_348_residues MTRSRFLMILPALFLCLLAVSCGKKEKEDPNVVELNFGHFPNVTHVQGLVAHHFSRQGKGWFEERLKEATGKDVRINWYV YNAGPSAMEAVFARSIELAYVGPSPAINAFVRSRGEDIRMIAGAVEGGAALVVPKDSLLKEPADFRGKVIATPQLGNTQD VSARAWFSRGGLHVTQRGGDVTILPTPNPEQLSLFRQGKLDGVWTVEPWVSRLVLTAGGRVLVDEKESIATVLVCGAEFL REKPEVAKALVQAHEELNEWIRLHPDEAQLIVVRELEELTHSRIDPALIAEAWKSIVIKDRISIPKLRQFVQDAHQAGFM KEVPDIGGLVVPEAAEEQLTMAKEAGGR >Mature_347_residues TRSRFLMILPALFLCLLAVSCGKKEKEDPNVVELNFGHFPNVTHVQGLVAHHFSRQGKGWFEERLKEATGKDVRINWYVY NAGPSAMEAVFARSIELAYVGPSPAINAFVRSRGEDIRMIAGAVEGGAALVVPKDSLLKEPADFRGKVIATPQLGNTQDV SARAWFSRGGLHVTQRGGDVTILPTPNPEQLSLFRQGKLDGVWTVEPWVSRLVLTAGGRVLVDEKESIATVLVCGAEFLR EKPEVAKALVQAHEELNEWIRLHPDEAQLIVVRELEELTHSRIDPALIAEAWKSIVIKDRISIPKLRQFVQDAHQAGFMK EVPDIGGLVVPEAAEEQLTMAKEAGGR
Specific function: Part Of A Binding-Protein-Dependent Transport System For Aliphatic Sulfonates. Putative Binding Protein. [C]
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38401; Mature: 38269
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSRFLMILPALFLCLLAVSCGKKEKEDPNVVELNFGHFPNVTHVQGLVAHHFSRQGKG CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC WFEERLKEATGKDVRINWYVYNAGPSAMEAVFARSIELAYVGPSPAINAFVRSRGEDIRM HHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCEEE IAGAVEGGAALVVPKDSLLKEPADFRGKVIATPQLGNTQDVSARAWFSRGGLHVTQRGGD EEEECCCCEEEEEECHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEEEECCCC VTILPTPNPEQLSLFRQGKLDGVWTVEPWVSRLVLTAGGRVLVDEKESIATVLVCGAEFL EEEEECCCCHHHHHHHCCCCCCEEEECHHHHHHHHHCCCEEEEECCHHHHHHHHHCHHHH REKPEVAKALVQAHEELNEWIRLHPDEAQLIVVRELEELTHSRIDPALIAEAWKSIVIKD HCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHC RISIPKLRQFVQDAHQAGFMKEVPDIGGLVVPEAAEEQLTMAKEAGGR CCCCHHHHHHHHHHHHCCCHHHCCCCCCEECCCHHHHHHHHHHHCCCC >Mature Secondary Structure TRSRFLMILPALFLCLLAVSCGKKEKEDPNVVELNFGHFPNVTHVQGLVAHHFSRQGKG CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC WFEERLKEATGKDVRINWYVYNAGPSAMEAVFARSIELAYVGPSPAINAFVRSRGEDIRM HHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCEEE IAGAVEGGAALVVPKDSLLKEPADFRGKVIATPQLGNTQDVSARAWFSRGGLHVTQRGGD EEEECCCCEEEEEECHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEEEECCCC VTILPTPNPEQLSLFRQGKLDGVWTVEPWVSRLVLTAGGRVLVDEKESIATVLVCGAEFL EEEEECCCCHHHHHHHCCCCCCEEEECHHHHHHHHHCCCEEEEECCHHHHHHHHHCHHHH REKPEVAKALVQAHEELNEWIRLHPDEAQLIVVRELEELTHSRIDPALIAEAWKSIVIKD HCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHC RISIPKLRQFVQDAHQAGFMKEVPDIGGLVVPEAAEEQLTMAKEAGGR CCCCHHHHHHHHHHHHCCCHHHCCCCCCEECCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA