| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734894
Identifier: 187734894
GI number: 187734894
Start: 462976
End: 464607
Strand: Reverse
Name: 187734894
Synonym: Amuc_0386
Alternate gene names: NA
Gene position: 464607-462976 (Counterclockwise)
Preceding gene: 187734895
Following gene: 187734893
Centisome position: 17.44
GC content: 57.78
Gene sequence:
>1632_bases ATGGAAAATTCTAATCATTTGACGGAATCATGGAGCCTGCCGTGGCAGTCCGTCCTGTCCAGCCAGCTTTGGAGGCTGGA ACACCTGTACTGGATAGAAAATAAAGCCGGTCAGCTCCAGCGTTTTTCCCTGAACAGGGCGCAGCGGCGGCTGCATGAGC GGCTGTGGTACAGGAATGACATCCTGAAGGCGCGCCAGTTGGGCATTTCTACGTATGTGGCCATGCTGATGCTGGATATG AGCCTGTTCCGGTCCAATTTCCATTGCGGAATCATTGATAAAAGCCTGCCGGACGCCCAGCAGAAACTGGCCAAGCTGCA TTTTGCCTGGGACCATCTGGATTACGTGCCGCCCAACCCCTCTGCGATGGATGTGGCCCTGGCCCGGCTGGGAGAGAGAA TCAAGAGCCTGTCCGGCGTGGAAAAAAAGGGGGAATGGCAACCCCGTACGTTGGCGCGCAGCCGCCTGGCTTTCTCCAAT GGGAGCGATGTGCGGGTGGGGACTAATCTGCGAGGGGGAACCATGCAGTTTCTCCATGTTTCCGAGCTGGCGTATGTTTC CGTGCATGCTCCGTGGAGAGCCAGGGAAATCCGTACGGGGGCAATCAATACAGTTCCCCCCGGAGGTTTTATTCTGAAGG AAAGCACTCATGAGGGCGGACGGTACGGAGTGAATTATGAACTGACGCGCCAGGCCATGGAAAACATGGGCAAAAGCGAG CTTTCCCCCTTGGATTTCAGATTCTTTTTTTTCAGCTGGTTTGACCAGGATGAGTACACTTTGCCGGGGCGCGGCAGATG GAGCAGGGAACTGGATGAGTATTTCCTTTCTCTGGAACGGGAGACCGGAGTGGTTCTGGATGCGGGGCAGAAGAGATGGT ATGCCCGGATGGCCCGGGTGATGGGCGCCTCCATGAAGCAGGAGTATCCGGGAACGCCGCAGGAGGCTTTTGCTACAGGG GAAGAAGGCAGTATTTACGGCAGCCGTATCATGGCCCTGCGGGAGCGGGGGCAGGTAGGGGTGGAGTTTGAGGCTGATCC GGACGCTCCCACTTTCACGGCATGGGATCTGGGGCTGAGTGACCATACGGCCATTTGGCTTGTGCAGATCATGGGAGACA GTTTCCACTGGCTGGACCATTATGCCGCCAGCCAGCAGCCCCTGGCCCATTACGTTGAAAAAATGAAGGACTGGGAGAAA AATCATGGTGTTGCGGTAACATTCCATCTTTTGCCTCATGATGCTGCACGGAGGGATGCGCACGGCATTTCCTATGTGGA GAATATGGGGAGGCTGGGATTGGTGAATGTGCGCGTCGTCCCCAGAACCACGGATGTCTGGCGTGGCATTAATACGCTGA GGGAATTGCTGGAGCGCAGTTTTTTCCATGCCCGCACCCAGGAAAAGGCGCGAGGCTTCTGTGGGGAAGAGGAGCCGGGA GGCGTGGAGCATCTGGAGTTGTACAGGTCCAGGCCTCCCGGCGTAGGCGGAGCCATTGCGGAAAGCCCCGTGCATGACGG GCATTCCCATACGGCGGATGCCGCACGAACCTTTGCGGAGGCTTGGTCCCATGGCCTGCTCCACGGAACCGGGAACGGCC GGGAGCGCGGCAGGCGCGCCCGGATGTGGTAA
Upstream 100 bases:
>100_bases AACGATCCACTGGCATACCGCCTTCCCCTGGACAAGGGGACGGAGGCCCAGAAGGGGATGACCAGGGAAGGAGCCCTGTT GAAAGAATTAATAGAGGAGT
Downstream 100 bases:
>100_bases CAGAGGGCAGGAGTAAAGGAAAAGAGATTTTTTTGATTGATAGTTGACAGTTTTGTCAAAAAGCGGTTCTTTTTTCCGGC CTCCAGCTGTCTAACGCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Terminase Large Subunit Protein; Large Subunit Terminase; Phage Terminase Large Subunit PBSX; Bacteriophage Terminase Large Subunit; PBSX Family Phage Terminase Large Subunit; Phage Terminase Large Subunit Pbsx; Terminase Large Subunit; DNA Packaging Protein GP; DNA Packaging Protein Gp
Number of amino acids: Translated: 543; Mature: 543
Protein sequence:
>543_residues MENSNHLTESWSLPWQSVLSSQLWRLEHLYWIENKAGQLQRFSLNRAQRRLHERLWYRNDILKARQLGISTYVAMLMLDM SLFRSNFHCGIIDKSLPDAQQKLAKLHFAWDHLDYVPPNPSAMDVALARLGERIKSLSGVEKKGEWQPRTLARSRLAFSN GSDVRVGTNLRGGTMQFLHVSELAYVSVHAPWRAREIRTGAINTVPPGGFILKESTHEGGRYGVNYELTRQAMENMGKSE LSPLDFRFFFFSWFDQDEYTLPGRGRWSRELDEYFLSLERETGVVLDAGQKRWYARMARVMGASMKQEYPGTPQEAFATG EEGSIYGSRIMALRERGQVGVEFEADPDAPTFTAWDLGLSDHTAIWLVQIMGDSFHWLDHYAASQQPLAHYVEKMKDWEK NHGVAVTFHLLPHDAARRDAHGISYVENMGRLGLVNVRVVPRTTDVWRGINTLRELLERSFFHARTQEKARGFCGEEEPG GVEHLELYRSRPPGVGGAIAESPVHDGHSHTADAARTFAEAWSHGLLHGTGNGRERGRRARMW
Sequences:
>Translated_543_residues MENSNHLTESWSLPWQSVLSSQLWRLEHLYWIENKAGQLQRFSLNRAQRRLHERLWYRNDILKARQLGISTYVAMLMLDM SLFRSNFHCGIIDKSLPDAQQKLAKLHFAWDHLDYVPPNPSAMDVALARLGERIKSLSGVEKKGEWQPRTLARSRLAFSN GSDVRVGTNLRGGTMQFLHVSELAYVSVHAPWRAREIRTGAINTVPPGGFILKESTHEGGRYGVNYELTRQAMENMGKSE LSPLDFRFFFFSWFDQDEYTLPGRGRWSRELDEYFLSLERETGVVLDAGQKRWYARMARVMGASMKQEYPGTPQEAFATG EEGSIYGSRIMALRERGQVGVEFEADPDAPTFTAWDLGLSDHTAIWLVQIMGDSFHWLDHYAASQQPLAHYVEKMKDWEK NHGVAVTFHLLPHDAARRDAHGISYVENMGRLGLVNVRVVPRTTDVWRGINTLRELLERSFFHARTQEKARGFCGEEEPG GVEHLELYRSRPPGVGGAIAESPVHDGHSHTADAARTFAEAWSHGLLHGTGNGRERGRRARMW >Mature_543_residues MENSNHLTESWSLPWQSVLSSQLWRLEHLYWIENKAGQLQRFSLNRAQRRLHERLWYRNDILKARQLGISTYVAMLMLDM SLFRSNFHCGIIDKSLPDAQQKLAKLHFAWDHLDYVPPNPSAMDVALARLGERIKSLSGVEKKGEWQPRTLARSRLAFSN GSDVRVGTNLRGGTMQFLHVSELAYVSVHAPWRAREIRTGAINTVPPGGFILKESTHEGGRYGVNYELTRQAMENMGKSE LSPLDFRFFFFSWFDQDEYTLPGRGRWSRELDEYFLSLERETGVVLDAGQKRWYARMARVMGASMKQEYPGTPQEAFATG EEGSIYGSRIMALRERGQVGVEFEADPDAPTFTAWDLGLSDHTAIWLVQIMGDSFHWLDHYAASQQPLAHYVEKMKDWEK NHGVAVTFHLLPHDAARRDAHGISYVENMGRLGLVNVRVVPRTTDVWRGINTLRELLERSFFHARTQEKARGFCGEEEPG GVEHLELYRSRPPGVGGAIAESPVHDGHSHTADAARTFAEAWSHGLLHGTGNGRERGRRARMW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62001; Mature: 62001
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENSNHLTESWSLPWQSVLSSQLWRLEHLYWIENKAGQLQRFSLNRAQRRLHERLWYRND CCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH ILKARQLGISTYVAMLMLDMSLFRSNFHCGIIDKSLPDAQQKLAKLHFAWDHLDYVPPNP HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC SAMDVALARLGERIKSLSGVEKKGEWQPRTLARSRLAFSNGSDVRVGTNLRGGTMQFLHV CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEE SELAYVSVHAPWRAREIRTGAINTVPPGGFILKESTHEGGRYGVNYELTRQAMENMGKSE CCEEEEEEECCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCC LSPLDFRFFFFSWFDQDEYTLPGRGRWSRELDEYFLSLERETGVVLDAGQKRWYARMARV CCCCEEEEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH MGASMKQEYPGTPQEAFATGEEGSIYGSRIMALRERGQVGVEFEADPDAPTFTAWDLGLS HHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCC DHTAIWLVQIMGDSFHWLDHYAASQQPLAHYVEKMKDWEKNHGVAVTFHLLPHDAARRDA CCHHEEEEEHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHCC HGISYVENMGRLGLVNVRVVPRTTDVWRGINTLRELLERSFFHARTQEKARGFCGEEEPG CCHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GVEHLELYRSRPPGVGGAIAESPVHDGHSHTADAARTFAEAWSHGLLHGTGNGRERGRRA CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHCCCC RMW CCC >Mature Secondary Structure MENSNHLTESWSLPWQSVLSSQLWRLEHLYWIENKAGQLQRFSLNRAQRRLHERLWYRND CCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH ILKARQLGISTYVAMLMLDMSLFRSNFHCGIIDKSLPDAQQKLAKLHFAWDHLDYVPPNP HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC SAMDVALARLGERIKSLSGVEKKGEWQPRTLARSRLAFSNGSDVRVGTNLRGGTMQFLHV CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEE SELAYVSVHAPWRAREIRTGAINTVPPGGFILKESTHEGGRYGVNYELTRQAMENMGKSE CCEEEEEEECCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCC LSPLDFRFFFFSWFDQDEYTLPGRGRWSRELDEYFLSLERETGVVLDAGQKRWYARMARV CCCCEEEEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH MGASMKQEYPGTPQEAFATGEEGSIYGSRIMALRERGQVGVEFEADPDAPTFTAWDLGLS HHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCC DHTAIWLVQIMGDSFHWLDHYAASQQPLAHYVEKMKDWEKNHGVAVTFHLLPHDAARRDA CCHHEEEEEHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHCC HGISYVENMGRLGLVNVRVVPRTTDVWRGINTLRELLERSFFHARTQEKARGFCGEEEPG CCHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GVEHLELYRSRPPGVGGAIAESPVHDGHSHTADAARTFAEAWSHGLLHGTGNGRERGRRA CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHCCCC RMW CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA