Click here to switch to the map view.

The map label for this gene is exoX [C]

Identifier: 187734853

GI number: 187734853

Start: 406656

End: 407249

Strand: Reverse

Name: exoX [C]

Synonym: Amuc_0345

Alternate gene names: 187734853

Gene position: 407249-406656 (Counterclockwise)

Preceding gene: 187734854

Following gene: 187734852

Centisome position: 15.29

GC content: 61.45

Gene sequence:

>594_bases
ATGCCTCTGCTTTCGGATACAATCGGCGGCCTGCATTTCGCCGCCATTGATTTTGAATCCGCCGGAGCGGCCCGGGGGGA
GACGGACCAGCCCGTCCAGATAGGCATAGCCGCATGTCCCCGCCTGGAGGACGAGCCTGAGTTGTGGACTTCCTATATTG
CGGTGGAGAAGCCGGTTTTATGGTCCGCCTCCCAGGTGCACGGCATTACTACGGAGATGCTGGCGGATGCCCCGTCTTTT
CCCTCCCTGTGGCCGGAGATACGTTCCCGGCTGGGGCAGGCCGTGGTGGTGGGGCATAATCCGGCCACGGAACGGAAGTT
CCTGCGCCGGTTTCCGGGCCACGGCTTCGGCCCGTGGCTGGATACGCTGGCCCTGGGCCGGATGTGCGTTCCCGGTCTGG
CGGATTATTCCCTGTCTTCTTTGTGCGGCGCCCTGGGGCTGACTTGTTCCGTGGAGGCTCTGCTTCCTGCGCGCCGATGG
CATGACGCTTTGTATGATGCGCTGGCAAGCCTGCTGATTGTCCGTTTTCTGGTAAAGGAATTGAATTTGTCCGGCCAGCC
TCTGGATGTATTGGGCAAGGCGGTGAGAACATGA

Upstream 100 bases:

>100_bases
AGGAAGGAGCGCTCCCGGCTGGCGGAACCGAGAGCCAAGAATACGGATATGGAAGACGATATGCCTGCCGGGGAATATGC
TCAGCTGGAGTTGTTCTGAT

Downstream 100 bases:

>100_bases
TTTTCCCGGCAGGGGAAAGAATGCTTTTCCGGGCCGCGTATTCGGAAAAAGATGAATGCTTCTGTTTTTTCCGCCGCTTT
TTTATTGTTGTCCCTTGCTT

Product: Exonuclease RNase T and DNA polymerase III

Products: NA

Alternate protein names: Exonuclease RNAse T And DNA Polymerase III

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MPLLSDTIGGLHFAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVEKPVLWSASQVHGITTEMLADAPSF
PSLWPEIRSRLGQAVVVGHNPATERKFLRRFPGHGFGPWLDTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRW
HDALYDALASLLIVRFLVKELNLSGQPLDVLGKAVRT

Sequences:

>Translated_197_residues
MPLLSDTIGGLHFAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVEKPVLWSASQVHGITTEMLADAPSF
PSLWPEIRSRLGQAVVVGHNPATERKFLRRFPGHGFGPWLDTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRW
HDALYDALASLLIVRFLVKELNLSGQPLDVLGKAVRT
>Mature_196_residues
PLLSDTIGGLHFAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVEKPVLWSASQVHGITTEMLADAPSFP
SLWPEIRSRLGQAVVVGHNPATERKFLRRFPGHGFGPWLDTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWH
DALYDALASLLIVRFLVKELNLSGQPLDVLGKAVRT

Specific function: Capable Of Degrading Both Single-Strand And Double- Strand DNA With 3' To 5' Polarity. Has Higher Affinity For ssDNA Ends Than For dsDNA. May Facilitate Recombinational Repair By Pre- Synaptic And/Or Post-Synaptic DNA Degradation. [C]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.- [C]

Molecular weight: Translated: 21286; Mature: 21155

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLSDTIGGLHFAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVEKPVL
CCCCHHHHCCEEEEEEECCCCCCCCCCCCCCEEEHHHHCCCCCCCHHHHHHHHHHCCCCC
WSASQVHGITTEMLADAPSFPSLWPEIRSRLGQAVVVGHNPATERKFLRRFPGHGFGPWL
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCHHH
DTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWHDALYDALASLLIVRFLVKE
HHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNLSGQPLDVLGKAVRT
HCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
PLLSDTIGGLHFAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVEKPVL
CCCHHHHCCEEEEEEECCCCCCCCCCCCCCEEEHHHHCCCCCCCHHHHHHHHHHCCCCC
WSASQVHGITTEMLADAPSFPSLWPEIRSRLGQAVVVGHNPATERKFLRRFPGHGFGPWL
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCHHH
DTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWHDALYDALASLLIVRFLVKE
HHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNLSGQPLDVLGKAVRT
HCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA