Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is gpmI

Identifier: 187734820

GI number: 187734820

Start: 364766

End: 366310

Strand: Reverse

Name: gpmI

Synonym: Amuc_0309

Alternate gene names: 187734820

Gene position: 366310-364766 (Counterclockwise)

Preceding gene: 187734821

Following gene: 187734819

Centisome position: 13.75

GC content: 55.6

Gene sequence:

>1545_bases
ATGTCTTCTAAAAAGCCTGTCGTTCTTGTTATTCGCGACGGCTGGGGCCGCAATCCGTTGGGGCCTGATGTCGCGAAAGA
GTACGGTGACGCCACTGTTCTGGCTGATACCCCCTTTACTGATTACCTCCTTGCCAACTATCCCCACAGCCTGCTGGGCG
CTTCCGGGGAGGACGTGGGCCTTCCGGACGGCCAGATGGGTAATTCCGAAGTAGGACACTTGAACCTGGGTGCGGGCCGC
GTTGTCTTTCAGGACCTCTGCCGGGTGGATAATGCCATCAAAGATGGGTCCATGGGGGAAAACGCCGTGCTGAAGACCGC
TTTTTCCCAGGCCGCTTCTTCCCGTCTGCACCTGCTTGGCCTGGTGAGTGACGGCGGCGTGCACAGCCATATCAACCATT
TGATCGGCATCGTCAAATATGCTTATGAAGCGGGTGTCCGCGATATTTGCATCCATGCCATTACGGATGGACGTGACTGC
TCGCCAACCAGTGGGGTCGGCTTTATTCGCCAGCTGGAGGAAGCCGTCAGGCCGTACGGCGCCAAAATTGCCACGGTTGT
CGGCCGTTTCTATGCGATGGACCGGGATAAGCGCTGGGACCGCAACAAGCTGGCATGGGATGCCATCGTTCTGGGGCGCG
GCGAACAGTGCTCCTGCTCCCCTGCCGAATATGTGGAGCAGTGTTATGCGAAGGGGGAGACGGATGAGTTCCTGAAGCCC
GGCATTTTTGCCTATGGCAACGAACAGCGCGTGAGGGATAACGATGTGGTGTTCTTCTTTAATTTCCGTGCGGACCGCGC
CCGGCAGATGAGCGACGCTTTCCTTTACCCCGAATTTGACGGATTTGACCGTGAAGTAACGCCCAAAGTGCACTATGTGA
CGTTGACGGAATACGATGCCAAGTATCCCTCTCCCATTGTTTTTGAACAGGAACAGCTGAACAATATTTTCGGGCAGATT
GTGTCGGAAGCCGGGAAAACCCAGCTCCGCATAGCGGAAACGGAAAAGTACGCCCACGTTACTTTCTTCTTTAACGGAGG
TGTGGAGACCCAGTTCCCCGGAGAAGACCGCATCCTTGTTCCTTCCCCCCGGGAAGTGGCTACTTATGACCTGAAGCCCC
AGATGAGCGCGGCAGAAGTGGCGGATAAATTTGTGGACGCTGTGAACAAGTATGATGTGGTAATCATGAATTTCGCCAAT
GGGGACATGGTTGGCCATACCGGATTTGTGGAAGCCGGCATCGCCGCCTGCGAAGCAGTGGACAGCGCCTTGGAAAAATG
TGTGAAGAAGGTGTTGGAACTTGGCGGCAAGCTGCTTATTACGGCGGATCATGGCAATGCCGAACACATGCGCAATGAGG
ATGGTTCTCCGAATACAGCCCACACGACCAACCTTGTGGATCTCATTTACGTGGCGGACGACAAGGATCAGGTAACTCTC
TCCGATGGCATTCTGGCGGATGTCGCTCCCACGCTGCTGAGCCTGATGGGGCTGAAACAGCCTGCCGAAATGTCCGGACA
TTCCCTGGTGACGCCTGGGAAATAG

Upstream 100 bases:

>100_bases
GTGTGGGGAAGGGCGGCAAACCTCAGGCAATTCCGGAATCGGAGAGGGAATGCCTGATTTCAGGCTTTTCAAAAGGAGGG
GATGCCTGTAAATAAAGCCT

Downstream 100 bases:

>100_bases
CGGGCTGCTGAGTTCATTGATGAAATCCGTTTCCGGATGCGTTCCGGAAACGGATTTTTCTATGTCATGCTTTCCGGACG
GGGCAAAATGGGAAAGCAGG

Product: phosphoglyceromutase

Products: NA

Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MSSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVGLPDGQMGNSEVGHLNLGAGR
VVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDC
SPTSGVGFIRQLEEAVRPYGAKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKP
GIFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDAKYPSPIVFEQEQLNNIFGQI
VSEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILVPSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFAN
GDMVGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTL
SDGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK

Sequences:

>Translated_514_residues
MSSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVGLPDGQMGNSEVGHLNLGAGR
VVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDC
SPTSGVGFIRQLEEAVRPYGAKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKP
GIFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDAKYPSPIVFEQEQLNNIFGQI
VSEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILVPSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFAN
GDMVGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTL
SDGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK
>Mature_513_residues
SSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVGLPDGQMGNSEVGHLNLGAGRV
VFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCS
PTSGVGFIRQLEEAVRPYGAKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKPG
IFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDAKYPSPIVFEQEQLNNIFGQIV
SEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILVPSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFANG
DMVGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTLS
DGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK

Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate

COG id: COG0696

COG function: function code G; Phosphoglyceromutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BPG-independent phosphoglycerate mutase family

Homologues:

Organism=Escherichia coli, GI1790041, Length=517, Percent_Identity=49.5164410058027, Blast_Score=480, Evalue=1e-137,
Organism=Caenorhabditis elegans, GI32564249, Length=522, Percent_Identity=46.1685823754789, Blast_Score=416, Evalue=1e-116,
Organism=Caenorhabditis elegans, GI17507741, Length=522, Percent_Identity=46.1685823754789, Blast_Score=416, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GPMI_AKKM8 (B2UMU5)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001876932.1
- ProteinModelPortal:   B2UMU5
- GeneID:   6275075
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_0309
- HOGENOM:   HBG613255
- OMA:   DHGNAEL
- ProtClustDB:   PRK05434
- GO:   GO:0005737
- GO:   GO:0006096
- HAMAP:   MF_01038
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR011258
- InterPro:   IPR006124
- InterPro:   IPR005995
- Gene3D:   G3DSA:3.40.720.10
- Gene3D:   G3DSA:3.40.1450.10
- PIRSF:   PIRSF001492
- TIGRFAMs:   TIGR01307

Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core; SSF64158 BPG-indep_PGM_N

EC number: =5.4.2.1

Molecular weight: Translated: 56145; Mature: 56014

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: ACT_SITE 69-69

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVG
CCCCCCEEEEEECCCCCCCCCHHHHHHHCCEEEEECCCCHHHHHHCCCHHHHCCCCCCCC
LPDGQMGNSEVGHLNLGAGRVVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLG
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE
LVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCSPTSGVGFIRQLEEAVRPYG
EECCCCHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
AKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKP
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCC
GIFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDA
CEEEECCCCEECCCCEEEEEECCCHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEEECCC
KYPSPIVFEQEQLNNIFGQIVSEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILV
CCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEC
PSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFANGDMVGHTGFVEAGIAACEAV
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
DSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTL
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEE
SDGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK
CCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCC
>Mature Secondary Structure 
SSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVG
CCCCCEEEEEECCCCCCCCCHHHHHHHCCEEEEECCCCHHHHHHCCCHHHHCCCCCCCC
LPDGQMGNSEVGHLNLGAGRVVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLG
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE
LVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCSPTSGVGFIRQLEEAVRPYG
EECCCCHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
AKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKP
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCC
GIFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDA
CEEEECCCCEECCCCEEEEEECCCHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEEECCC
KYPSPIVFEQEQLNNIFGQIVSEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILV
CCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEC
PSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFANGDMVGHTGFVEAGIAACEAV
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
DSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTL
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEE
SDGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK
CCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA