| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734699
Identifier: 187734699
GI number: 187734699
Start: 233077
End: 235443
Strand: Direct
Name: 187734699
Synonym: Amuc_0186
Alternate gene names: NA
Gene position: 233077-235443 (Clockwise)
Preceding gene: 187734698
Following gene: 187734700
Centisome position: 8.75
GC content: 58.6
Gene sequence:
>2367_bases ATGAACGTCCCTGCAACCTTGAAACATTCCTTCCTGCTCTGCCTTTTCGCGGCAGCCGTCCCCCTCCGGGCCATTCCGGC CCCCATGCAGGTCACCGCCTCCACCCCCGCCCGGGTATGGACGGAAGGATACGGCACGGGCAACGGAAGGCTGGGCATCC TCTCTTTCGGCGTTTTTCCGAAGGAAACCGTCGTCCTCAATGAAGGAAGCATTTTCGCAAAAAAAAATTTCCAAATGAGG GAAGGCGCCGCGGAAGCTCTGGACAAGGCGCGCGAACTTTGCAAGGAAGGAAAATACCGCAGTGCAGACCAGCTATTCCG TAAGAATATCCTTCCCCCCGGCAACATTGCGGGGGATTACCAGCAGGGGGGGCGTCTTCAGGTGGAATTCCAGGGGCTTC CTTCACCTTCCTCCTATCAGCGTACACTGGATATGCGACGGGGCAAGGCAACCACCCGCGCCCAATTCGGCACGGGGGAA TTGACCACAGAAATCCTGGCGGCCCCGTCCAGCGACTGCGCCGCCTACCACATTGCCTGCACGATGCCGTCCGGATGCCG CGTTTCCCTGAATCTGGAACACCCGGATCCGTCCGCCCGAATTGTTGCGCAGCCGAATGGCTGGGTGCTGGAAGGACAGG GAAGCAACGGAGGCACCCGGTTTGAAAACACGGTGGTCATCCTGGCGCCCGGAGCCTCCGTTACCCGCAAAGGCTCAACA ATTATTCTTGATTCCGCCCGGGAAGTGATGGTGCTTTCATCCATTTCCACAGATTACAATATCCGGAAGCCGGAAGCTCC CCTGACGCATTCCCTGGCGGCTAAAAACGCGAGAATCCTGGCAAAAGCGCAAAAGGCGGGATGGAAAAAACTGGCGGCGG AAACGGAAGATTATTTTTCCCGGCTCATGACGCGCTGTCAGGTGGATCTGGGGGATTCCCCGGCCGGGGTTTCCGCCATG ACCACCGCCCAAAGGCTGGAGCGGGTCAAACAGGGAAAGAAGGATCCGGATCTTCTGGAACAGCTTTTCCAGTTCGGCCG CTTCTGCACGATTGCCCACACCAGGCCGGGGCAGCTTCCCTGCGGTTTGCAGGGATTATGGAATCCGGAGCTGAGGGCGG CGTGGATGGGCTGCTATTTCCTGAATATCAACAGCCAGATGAACCAGTGGCCCTCCCATGTCACCGGGCTGGGAGAATTC CAGAGCTCCTATCTTGATTTTGTCCGCAGCCTGCGCCCCCACGGAGAGGAGTTTGCGCGCTTCATCAAACGGGACGGCTT CTGCTTCGGCCACTATACGGATTGCTGGAAGCGCACCTATTTTTCAGGCAACAATCCGGAATGGGGGGCCAGCCTCATGA ACGGGGCATGGGCATGCGCCCACCTGGTGGACAGTTACCGCTTTACCGGAGACCGGGAAGACCTTAAAAAATCGCTGCCC ATTCTGGAATCCAACGCGCGTTTCATCATGTCCTGGTTTGAAGACGACGGCGAGGGCCGTTACCTCTCCGGCCCGGGGGT GTCTCCGGAGACCGGATTTTACGCGCCGGACGGCACAGGCCCCAACGTGCTTTCCTATGTTTCCAACGGCACGTCCCATG ACCAGCTTCTGGGCAGGGAGGCTCTCCGCAATTATATCTACGCCTGCGGAGAGCTGGGCATAAGGACTCCCACCCTGCTT AAAGCCGTCCAATTTCTCAGGAAAATCCCCCAGCCTGCCATCGGTCCCGACGGAAGGGTGCAGGAATGGAGGCAGCCTTT TGAAGAAATGCAGAAGGGCCACCGGCACATCAGCCACCTTTACGGCCTGTTCCCCGGCACGGAATGGGATGTTCTCAATA CTCCGGAATATGCGGAGGCCGTACGCAAGTCAGCCGATTTCCGGCGCAAGTACGCGGATATGGGAAACAACGGCATCAGG ACGGGATGGAGCACGGCGTGGCTCATCAATCTTTATGCCGCCCTTGGCGACGGGAACGCCGCAGAGGACAGGATGTACAC CATGCTGAGGCACTACATCAACTCCAACCTTTTTGACCTCCATCCCCCGTTCCAGATAGAAGGGAATTTCGGCTTTTCCT CCGGCGTGGCCGAATGCCTGATCCAGAGCCGGATCATGCAGGACGGGTTCCAGGTTATCCTGCTGGCTCCGGCCCTGGCA GACGACTGGAAGAAGGGGTCTGCCACGGGATTGCGCACGCGGGGAGGGCTTAAGGTGGACTTGTCCTGGCAAGACGGCCG GGTGCAGGCCACGGCTACCGCTGCGCGTCCGGGCAAATTCCGGTTCATGCATCAGGGCCGGAAAAAGGATTTGTCCATGA ATAAGGGAGAAACGGTGCGTCTTGATTTTCCTCCGCTTTCCCATTAG
Upstream 100 bases:
>100_bases TTTGCGGTCATTTACGCTGGCGCCGGAAGCCGGTTCAAAAAATAGCATTTTTTACACCAGCTTTCTTTTACTTTTATTAT ACGCAACATTATCTTTTCCC
Downstream 100 bases:
>100_bases GACTCCCCTTTCTGCGTTACCTCTTCAATTTCCGCTATGCATTTCTTTTCCATGACTTTCAGGCTCGGTCTGCTCATAGT GGTGGTCTGCATCGCCCTCA
Product: glycoside hydrolase family 95
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Large Secreted Protein; Fibronectin Type III Domain Protein; Twin-Arginine Translocation Pathway Signal; Glycoside Hydrolase Family Protein; Six-Hairpin Glycosidase; 1 2-Alpha-L-Fucosidase; Alpha/Beta Hydrolase Domain-Containing Protein; Alpha-Fucosidase; Fibronectin Type III Domain-Containing Protein; 1 2-A-L-Fucosidase; Ricin B Lectin; Glycosyl Hydrolase; Candidate Alpha-L-Fucosidase; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MNVPATLKHSFLLCLFAAAVPLRAIPAPMQVTASTPARVWTEGYGTGNGRLGILSFGVFPKETVVLNEGSIFAKKNFQMR EGAAEALDKARELCKEGKYRSADQLFRKNILPPGNIAGDYQQGGRLQVEFQGLPSPSSYQRTLDMRRGKATTRAQFGTGE LTTEILAAPSSDCAAYHIACTMPSGCRVSLNLEHPDPSARIVAQPNGWVLEGQGSNGGTRFENTVVILAPGASVTRKGST IILDSAREVMVLSSISTDYNIRKPEAPLTHSLAAKNARILAKAQKAGWKKLAAETEDYFSRLMTRCQVDLGDSPAGVSAM TTAQRLERVKQGKKDPDLLEQLFQFGRFCTIAHTRPGQLPCGLQGLWNPELRAAWMGCYFLNINSQMNQWPSHVTGLGEF QSSYLDFVRSLRPHGEEFARFIKRDGFCFGHYTDCWKRTYFSGNNPEWGASLMNGAWACAHLVDSYRFTGDREDLKKSLP ILESNARFIMSWFEDDGEGRYLSGPGVSPETGFYAPDGTGPNVLSYVSNGTSHDQLLGREALRNYIYACGELGIRTPTLL KAVQFLRKIPQPAIGPDGRVQEWRQPFEEMQKGHRHISHLYGLFPGTEWDVLNTPEYAEAVRKSADFRRKYADMGNNGIR TGWSTAWLINLYAALGDGNAAEDRMYTMLRHYINSNLFDLHPPFQIEGNFGFSSGVAECLIQSRIMQDGFQVILLAPALA DDWKKGSATGLRTRGGLKVDLSWQDGRVQATATAARPGKFRFMHQGRKKDLSMNKGETVRLDFPPLSH
Sequences:
>Translated_788_residues MNVPATLKHSFLLCLFAAAVPLRAIPAPMQVTASTPARVWTEGYGTGNGRLGILSFGVFPKETVVLNEGSIFAKKNFQMR EGAAEALDKARELCKEGKYRSADQLFRKNILPPGNIAGDYQQGGRLQVEFQGLPSPSSYQRTLDMRRGKATTRAQFGTGE LTTEILAAPSSDCAAYHIACTMPSGCRVSLNLEHPDPSARIVAQPNGWVLEGQGSNGGTRFENTVVILAPGASVTRKGST IILDSAREVMVLSSISTDYNIRKPEAPLTHSLAAKNARILAKAQKAGWKKLAAETEDYFSRLMTRCQVDLGDSPAGVSAM TTAQRLERVKQGKKDPDLLEQLFQFGRFCTIAHTRPGQLPCGLQGLWNPELRAAWMGCYFLNINSQMNQWPSHVTGLGEF QSSYLDFVRSLRPHGEEFARFIKRDGFCFGHYTDCWKRTYFSGNNPEWGASLMNGAWACAHLVDSYRFTGDREDLKKSLP ILESNARFIMSWFEDDGEGRYLSGPGVSPETGFYAPDGTGPNVLSYVSNGTSHDQLLGREALRNYIYACGELGIRTPTLL KAVQFLRKIPQPAIGPDGRVQEWRQPFEEMQKGHRHISHLYGLFPGTEWDVLNTPEYAEAVRKSADFRRKYADMGNNGIR TGWSTAWLINLYAALGDGNAAEDRMYTMLRHYINSNLFDLHPPFQIEGNFGFSSGVAECLIQSRIMQDGFQVILLAPALA DDWKKGSATGLRTRGGLKVDLSWQDGRVQATATAARPGKFRFMHQGRKKDLSMNKGETVRLDFPPLSH >Mature_788_residues MNVPATLKHSFLLCLFAAAVPLRAIPAPMQVTASTPARVWTEGYGTGNGRLGILSFGVFPKETVVLNEGSIFAKKNFQMR EGAAEALDKARELCKEGKYRSADQLFRKNILPPGNIAGDYQQGGRLQVEFQGLPSPSSYQRTLDMRRGKATTRAQFGTGE LTTEILAAPSSDCAAYHIACTMPSGCRVSLNLEHPDPSARIVAQPNGWVLEGQGSNGGTRFENTVVILAPGASVTRKGST IILDSAREVMVLSSISTDYNIRKPEAPLTHSLAAKNARILAKAQKAGWKKLAAETEDYFSRLMTRCQVDLGDSPAGVSAM TTAQRLERVKQGKKDPDLLEQLFQFGRFCTIAHTRPGQLPCGLQGLWNPELRAAWMGCYFLNINSQMNQWPSHVTGLGEF QSSYLDFVRSLRPHGEEFARFIKRDGFCFGHYTDCWKRTYFSGNNPEWGASLMNGAWACAHLVDSYRFTGDREDLKKSLP ILESNARFIMSWFEDDGEGRYLSGPGVSPETGFYAPDGTGPNVLSYVSNGTSHDQLLGREALRNYIYACGELGIRTPTLL KAVQFLRKIPQPAIGPDGRVQEWRQPFEEMQKGHRHISHLYGLFPGTEWDVLNTPEYAEAVRKSADFRRKYADMGNNGIR TGWSTAWLINLYAALGDGNAAEDRMYTMLRHYINSNLFDLHPPFQIEGNFGFSSGVAECLIQSRIMQDGFQVILLAPALA DDWKKGSATGLRTRGGLKVDLSWQDGRVQATATAARPGKFRFMHQGRKKDLSMNKGETVRLDFPPLSH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87330; Mature: 87330
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVPATLKHSFLLCLFAAAVPLRAIPAPMQVTASTPARVWTEGYGTGNGRLGILSFGVFP CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCCCCCCCEEEEEECCCC KETVVLNEGSIFAKKNFQMREGAAEALDKARELCKEGKYRSADQLFRKNILPPGNIAGDY CCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC QQGGRLQVEFQGLPSPSSYQRTLDMRRGKATTRAQFGTGELTTEILAAPSSDCAAYHIAC CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCHHEECCCCHHHHHHHHCCCCCCCEEEEEE TMPSGCRVSLNLEHPDPSARIVAQPNGWVLEGQGSNGGTRFENTVVILAPGASVTRKGST ECCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCEECCEEEEEECCCCCCCCCCE IILDSAREVMVLSSISTDYNIRKPEAPLTHSLAAKNARILAKAQKAGWKKLAAETEDYFS EEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH RLMTRCQVDLGDSPAGVSAMTTAQRLERVKQGKKDPDLLEQLFQFGRFCTIAHTRPGQLP HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCC CGLQGLWNPELRAAWMGCYFLNINSQMNQWPSHVTGLGEFQSSYLDFVRSLRPHGEEFAR CCCCCCCCHHHHHEEEEEEEEEECCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FIKRDGFCFGHYTDCWKRTYFSGNNPEWGASLMNGAWACAHLVDSYRFTGDREDLKKSLP HHHHCCEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC ILESNARFIMSWFEDDGEGRYLSGPGVSPETGFYAPDGTGPNVLSYVSNGTSHDQLLGRE CCCCCCCEEEEEECCCCCCCEECCCCCCCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHH ALRNYIYACGELGIRTPTLLKAVQFLRKIPQPAIGPDGRVQEWRQPFEEMQKGHRHISHL HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH YGLFPGTEWDVLNTPEYAEAVRKSADFRRKYADMGNNGIRTGWSTAWLINLYAALGDGNA HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC AEDRMYTMLRHYINSNLFDLHPPFQIEGNFGFSSGVAECLIQSRIMQDGFQVILLAPALA HHHHHHHHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHH DDWKKGSATGLRTRGGLKVDLSWQDGRVQATATAARPGKFRFMHQGRKKDLSMNKGETVR HCCCCCCCCCCEECCCEEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCEEE LDFPPLSH EECCCCCC >Mature Secondary Structure MNVPATLKHSFLLCLFAAAVPLRAIPAPMQVTASTPARVWTEGYGTGNGRLGILSFGVFP CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCCCCCCCEEEEEECCCC KETVVLNEGSIFAKKNFQMREGAAEALDKARELCKEGKYRSADQLFRKNILPPGNIAGDY CCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC QQGGRLQVEFQGLPSPSSYQRTLDMRRGKATTRAQFGTGELTTEILAAPSSDCAAYHIAC CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCHHEECCCCHHHHHHHHCCCCCCCEEEEEE TMPSGCRVSLNLEHPDPSARIVAQPNGWVLEGQGSNGGTRFENTVVILAPGASVTRKGST ECCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCEECCEEEEEECCCCCCCCCCE IILDSAREVMVLSSISTDYNIRKPEAPLTHSLAAKNARILAKAQKAGWKKLAAETEDYFS EEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH RLMTRCQVDLGDSPAGVSAMTTAQRLERVKQGKKDPDLLEQLFQFGRFCTIAHTRPGQLP HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCC CGLQGLWNPELRAAWMGCYFLNINSQMNQWPSHVTGLGEFQSSYLDFVRSLRPHGEEFAR CCCCCCCCHHHHHEEEEEEEEEECCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FIKRDGFCFGHYTDCWKRTYFSGNNPEWGASLMNGAWACAHLVDSYRFTGDREDLKKSLP HHHHCCEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC ILESNARFIMSWFEDDGEGRYLSGPGVSPETGFYAPDGTGPNVLSYVSNGTSHDQLLGRE CCCCCCCEEEEEECCCCCCCEECCCCCCCCCCEECCCCCCCHHHHHHCCCCCHHHHHHHH ALRNYIYACGELGIRTPTLLKAVQFLRKIPQPAIGPDGRVQEWRQPFEEMQKGHRHISHL HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH YGLFPGTEWDVLNTPEYAEAVRKSADFRRKYADMGNNGIRTGWSTAWLINLYAALGDGNA HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC AEDRMYTMLRHYINSNLFDLHPPFQIEGNFGFSSGVAECLIQSRIMQDGFQVILLAPALA HHHHHHHHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHH DDWKKGSATGLRTRGGLKVDLSWQDGRVQATATAARPGKFRFMHQGRKKDLSMNKGETVR HCCCCCCCCCCEECCCEEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCEEE LDFPPLSH EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA