| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734688
Identifier: 187734688
GI number: 187734688
Start: 220441
End: 221613
Strand: Reverse
Name: 187734688
Synonym: Amuc_0175
Alternate gene names: NA
Gene position: 221613-220441 (Counterclockwise)
Preceding gene: 187734689
Following gene: 187734685
Centisome position: 8.32
GC content: 59.42
Gene sequence:
>1173_bases ATGATGATGAAATATTTATGGGCGGCATTTGCGGCGGCTTCCGCGTATGCCCAGGAAATAGCTTCCCCGCTGCCTCCGGA GCAGATGATTGCCCCGGAGGACAAAAGCGTGCTGGACAGCCAGGCCAAGGAGATTTTCCGGGAATGGGACAAGGTGGCTG TTCCGGTGGGGCAGTCCGTAGTGGCTCTGGTTGCCGGCAATACCCAGGTGGCTTTGGGAACAGTGGTGGGGAAGGGAAAA GTCCTCACCAAGCTGAGCGATCTCCAGAAGGAACGGCGTCCGGTCATGCTGGTGGATTCTTCCGGGCGGGTTTATGACGC CAAGGTGCTCTTTGCCCTTCCGGAGCATGATCTGCTGATGATGGATGTGCCGGGGCTTCCCGCTCCTCCCATTGACCTGG ATTCCTATGTGCAGGCGAAGGAAGGGGACGTGATTGCAGCCGTGTCGCCCACGGGGCATGTGAGCGACTTCGGAGTCGTT TCCGTGGCTCAGCGCAGCCTGCGGGCGGATGACCAGCCTTATCTCGGCATTGTTTCCGATCCCCGCTGGGACGGGGAGGG GGTCATGATAGGCGGCGTGGAAGCCGGAAGCGGCGCGCACCGCAGCGGATTGACGGCCGGCGATGTGCTGATGAAGCTGA ATGGAAAGCCGGTGGATGGAATGTACTCCATCCGTGCCGCCATGGTCGGGGTGCGTCCCGGTGAGACGGTTCCCGTGGAA GTAAGGCGGCGGAACCAGGTGATAGAAGGAAAACTCCTCACGGGGCCCAGGCCCAGGGTGATGAAATTCCCGCAAAAGCG TCTCGACATGATGAACTCCATGGGCAACCGGATGAGCTTGAAAAGGGATGAATTCCCTTTGGTTATCCAGTCGGACATGA CCTTGTTCCCGGAACGGGCTGGATGCCCGGTCATTGACGTCAACGGAAAATTTGTTGGGCTGGCTCTGAGCCGGGCCGGA CGCACGGAGACCTATATCCTGCCTTCCTGGATATGCAGGGAACTGGTGGAAGGAGTGCTCCCGCAGGTTCAGCAATACCG GGCGGGACGCGGGGAAAACATTCCGGAGGCCCAGCCTGTGGATGATTCCTATGACGCCCGGCGTCTGGAGGAAAACCGGC GAAAGGTGGAGGATAAGATGAGCCGTCAGGGACTGGTGCCCAAAGTTTATTAA
Upstream 100 bases:
>100_bases TGGTGGTGGTGAGGAAAGGTACGGCTTACAAGGCGGATCTTACATTCGGCAGGCGCGGCGACCTGATGTCCGGCCTGAAA TACCAGGAACAAACTCAAGG
Downstream 100 bases:
>100_bases GCCTGCCCGGATGCCGGAAGGCGGCAGGTGAACTTTTTCGGCAAACCGCATGGCTTCGAGACCTCTTTCTCCGCCTGCCG CATTGGAGCCGCGGGAAACA
Product: PDZ/DHR/GLGF domain protein
Products: NA
Alternate protein names: Serine Protease
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MMMKYLWAAFAAASAYAQEIASPLPPEQMIAPEDKSVLDSQAKEIFREWDKVAVPVGQSVVALVAGNTQVALGTVVGKGK VLTKLSDLQKERRPVMLVDSSGRVYDAKVLFALPEHDLLMMDVPGLPAPPIDLDSYVQAKEGDVIAAVSPTGHVSDFGVV SVAQRSLRADDQPYLGIVSDPRWDGEGVMIGGVEAGSGAHRSGLTAGDVLMKLNGKPVDGMYSIRAAMVGVRPGETVPVE VRRRNQVIEGKLLTGPRPRVMKFPQKRLDMMNSMGNRMSLKRDEFPLVIQSDMTLFPERAGCPVIDVNGKFVGLALSRAG RTETYILPSWICRELVEGVLPQVQQYRAGRGENIPEAQPVDDSYDARRLEENRRKVEDKMSRQGLVPKVY
Sequences:
>Translated_390_residues MMMKYLWAAFAAASAYAQEIASPLPPEQMIAPEDKSVLDSQAKEIFREWDKVAVPVGQSVVALVAGNTQVALGTVVGKGK VLTKLSDLQKERRPVMLVDSSGRVYDAKVLFALPEHDLLMMDVPGLPAPPIDLDSYVQAKEGDVIAAVSPTGHVSDFGVV SVAQRSLRADDQPYLGIVSDPRWDGEGVMIGGVEAGSGAHRSGLTAGDVLMKLNGKPVDGMYSIRAAMVGVRPGETVPVE VRRRNQVIEGKLLTGPRPRVMKFPQKRLDMMNSMGNRMSLKRDEFPLVIQSDMTLFPERAGCPVIDVNGKFVGLALSRAG RTETYILPSWICRELVEGVLPQVQQYRAGRGENIPEAQPVDDSYDARRLEENRRKVEDKMSRQGLVPKVY >Mature_390_residues MMMKYLWAAFAAASAYAQEIASPLPPEQMIAPEDKSVLDSQAKEIFREWDKVAVPVGQSVVALVAGNTQVALGTVVGKGK VLTKLSDLQKERRPVMLVDSSGRVYDAKVLFALPEHDLLMMDVPGLPAPPIDLDSYVQAKEGDVIAAVSPTGHVSDFGVV SVAQRSLRADDQPYLGIVSDPRWDGEGVMIGGVEAGSGAHRSGLTAGDVLMKLNGKPVDGMYSIRAAMVGVRPGETVPVE VRRRNQVIEGKLLTGPRPRVMKFPQKRLDMMNSMGNRMSLKRDEFPLVIQSDMTLFPERAGCPVIDVNGKFVGLALSRAG RTETYILPSWICRELVEGVLPQVQQYRAGRGENIPEAQPVDDSYDARRLEENRRKVEDKMSRQGLVPKVY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42682; Mature: 42682
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMMKYLWAAFAAASAYAQEIASPLPPEQMIAPEDKSVLDSQAKEIFREWDKVAVPVGQSV CHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCEE VALVAGNTQVALGTVVGKGKVLTKLSDLQKERRPVMLVDSSGRVYDAKVLFALPEHDLLM EEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEECCCCCEEE MDVPGLPAPPIDLDSYVQAKEGDVIAAVSPTGHVSDFGVVSVAQRSLRADDQPYLGIVSD EECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECC PRWDGEGVMIGGVEAGSGAHRSGLTAGDVLMKLNGKPVDGMYSIRAAMVGVRPGETVPVE CCCCCCEEEEECEECCCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHEECCCCCCCEEE VRRRNQVIEGKLLTGPRPRVMKFPQKRLDMMNSMGNRMSLKRDEFPLVIQSDMTLFPERA ECCCCCEECCEECCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCEECCCCC GCPVIDVNGKFVGLALSRAGRTETYILPSWICRELVEGVLPQVQQYRAGRGENIPEAQPV CCCEEECCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DDSYDARRLEENRRKVEDKMSRQGLVPKVY CCCHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MMMKYLWAAFAAASAYAQEIASPLPPEQMIAPEDKSVLDSQAKEIFREWDKVAVPVGQSV CHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCEE VALVAGNTQVALGTVVGKGKVLTKLSDLQKERRPVMLVDSSGRVYDAKVLFALPEHDLLM EEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEECCCCCEEE MDVPGLPAPPIDLDSYVQAKEGDVIAAVSPTGHVSDFGVVSVAQRSLRADDQPYLGIVSD EECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECC PRWDGEGVMIGGVEAGSGAHRSGLTAGDVLMKLNGKPVDGMYSIRAAMVGVRPGETVPVE CCCCCCEEEEECEECCCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHEECCCCCCCEEE VRRRNQVIEGKLLTGPRPRVMKFPQKRLDMMNSMGNRMSLKRDEFPLVIQSDMTLFPERA ECCCCCEECCEECCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCEECCCCC GCPVIDVNGKFVGLALSRAGRTETYILPSWICRELVEGVLPQVQQYRAGRGENIPEAQPV CCCEEECCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DDSYDARRLEENRRKVEDKMSRQGLVPKVY CCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA