| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734598
Identifier: 187734598
GI number: 187734598
Start: 110100
End: 111743
Strand: Reverse
Name: 187734598
Synonym: Amuc_0084
Alternate gene names: NA
Gene position: 111743-110100 (Counterclockwise)
Preceding gene: 187734601
Following gene: 187734597
Centisome position: 4.19
GC content: 50.79
Gene sequence:
>1644_bases ATGAACAATTATATACCAATCAACAAGGCAGTTAATCCCGTCTACATCTATCAAGGGAATGAGCCTCTTATCAGCAAGAC GCTCGGAGTTGACGCGATGACGTTCAACTTTGACGGTTCGGCGTGCGAACACGCCACTTGCACCGGAGCGCCGGAAATGT TCATCAAGGTCGAGGAAGACGGCCTGTACTATTTCGGCGTGGAAGCCGACGACACAGGCAGCCTGACGATTGCCGGTGAG CAAGCTATAAAAAAGGATGGGATACCACCCAACGGCAAACTGAATATTGAAACCGATTCCAGGTACCTGAAAGCTGGCTA TTACAAGGTGGCCTTGTCTTACACGAATAATGCCTACACCCCCGTCAGCAACAATGCCATTGCATTCAACGTCACGATGG ACAGGGAACCCATTCAGGCAGGGAAGTATGAAGGCAACTCAACGATGAAGCGCGAATTCTCGTCGTCCCCCAAAATCAAA TTGTGGACGATTGAGAAGGAATCCGCTATCACCTGTGAGCCATCCAAGGAAGTGGGACTGGAATTTGAGAAACCGGACCC CGTCTATTTGGAAGGGAATGGTGACTGCAATGTAAGTAGCTTGAGACCTAAGATTTGCGTAACGGTTTGCAAAGATGAAT CGGAAAACGTATGGAGGTGTCGTGTTGTTTCCGTTTCTGCCGGAGCCAAGCTAACTATGTATGAAGGCATTTACGTGAAT CCCTATGTTGATCCCCCTCTCAATGAAGAAGAAGCCACCGAAGCGGTCAACGAAATGAACGGTTATCAATCTCGTGCAGA AGTTGGAACATGGCACACGCCGCAGGCTTCCCTCGCCCACGAAGAACACCACCGCCGTCAATGGGAGGATGCCTACAAGT TCTACTGGAAGGACTCCAAAATACAGGAAATGCTTGAAAATCAGACTATCTCCTGCGACAAAGAACCGAACATGGATGAA GCCGTGAAGTTCATGCAGGCTCTTGCCAATGAAATGGCATTGGACCTTTGGAAAGAAACGTCAGACTATGTACTGGCGTT GCCGGATGATGCCAATGACAGACCCTATTGCGCGGGACAGGAAGTCCTGAACGAGGCAACCGCCTATGTCATTCGTCTGG CCGACGCGATGGGGTGGAACAATGTGCCCAGGTTTATCACGAAACCTGGAACGATCGAGCCTCCCTGTTTCATGCCTCCG GTCAGCGAAGGTAAAACCCGCAGCATGGCAATTGCAGAGGAATCGACACCTCTTCAGATCTCCATTGTGGACACATCCCA ATTCACGGAGGGCAAAATCACAGTCCGCTTCTGCAACGAAGGAAACGAGCCTGTCCGCATTCCCGATGAAATCAACGACG AAACGTCCGATTTCTTTTTCGTGACGGTGTTGAGGACGCAACAGGGGAAAATGCGCGTTCTGAACAGGGAAATTGGCACC ATGACCTTCCAGCGCCCCTTGAACTACCGGGAGCTTGCACCCGGTCAGGAATACAGCGTCACGATTCCGGCGTGTCTGGA TGAAGTCGATCTGGAAGGCTGGAAACAATGTTCTTGTGAACTGGAAACGCGCTACTATAATCAGCAGGGTAAGGATTGTT TCCTGGGGGTTCTCCGGGCAACGGCCAGGTTCACGCTGCAATGA
Upstream 100 bases:
>100_bases GGACTACGCGTTAAACGTGTTGATGGGTTCAGGGAACGCCGCCAGAATACTGGAAGGCTGATGGTTCGGTCTTTCCAAAA AGTAAACAACAACAATAGCA
Downstream 100 bases:
>100_bases AAAAAATCTTCCGGTATTTAGTACTTCTGGCAAGCCTGTCCCTCCATGCGGTTGCGTGGGGGGACATGGCCGACAACGGA GTGGAATGCTCCGTGGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 547; Mature: 547
Protein sequence:
>547_residues MNNYIPINKAVNPVYIYQGNEPLISKTLGVDAMTFNFDGSACEHATCTGAPEMFIKVEEDGLYYFGVEADDTGSLTIAGE QAIKKDGIPPNGKLNIETDSRYLKAGYYKVALSYTNNAYTPVSNNAIAFNVTMDREPIQAGKYEGNSTMKREFSSSPKIK LWTIEKESAITCEPSKEVGLEFEKPDPVYLEGNGDCNVSSLRPKICVTVCKDESENVWRCRVVSVSAGAKLTMYEGIYVN PYVDPPLNEEEATEAVNEMNGYQSRAEVGTWHTPQASLAHEEHHRRQWEDAYKFYWKDSKIQEMLENQTISCDKEPNMDE AVKFMQALANEMALDLWKETSDYVLALPDDANDRPYCAGQEVLNEATAYVIRLADAMGWNNVPRFITKPGTIEPPCFMPP VSEGKTRSMAIAEESTPLQISIVDTSQFTEGKITVRFCNEGNEPVRIPDEINDETSDFFFVTVLRTQQGKMRVLNREIGT MTFQRPLNYRELAPGQEYSVTIPACLDEVDLEGWKQCSCELETRYYNQQGKDCFLGVLRATARFTLQ
Sequences:
>Translated_547_residues MNNYIPINKAVNPVYIYQGNEPLISKTLGVDAMTFNFDGSACEHATCTGAPEMFIKVEEDGLYYFGVEADDTGSLTIAGE QAIKKDGIPPNGKLNIETDSRYLKAGYYKVALSYTNNAYTPVSNNAIAFNVTMDREPIQAGKYEGNSTMKREFSSSPKIK LWTIEKESAITCEPSKEVGLEFEKPDPVYLEGNGDCNVSSLRPKICVTVCKDESENVWRCRVVSVSAGAKLTMYEGIYVN PYVDPPLNEEEATEAVNEMNGYQSRAEVGTWHTPQASLAHEEHHRRQWEDAYKFYWKDSKIQEMLENQTISCDKEPNMDE AVKFMQALANEMALDLWKETSDYVLALPDDANDRPYCAGQEVLNEATAYVIRLADAMGWNNVPRFITKPGTIEPPCFMPP VSEGKTRSMAIAEESTPLQISIVDTSQFTEGKITVRFCNEGNEPVRIPDEINDETSDFFFVTVLRTQQGKMRVLNREIGT MTFQRPLNYRELAPGQEYSVTIPACLDEVDLEGWKQCSCELETRYYNQQGKDCFLGVLRATARFTLQ >Mature_547_residues MNNYIPINKAVNPVYIYQGNEPLISKTLGVDAMTFNFDGSACEHATCTGAPEMFIKVEEDGLYYFGVEADDTGSLTIAGE QAIKKDGIPPNGKLNIETDSRYLKAGYYKVALSYTNNAYTPVSNNAIAFNVTMDREPIQAGKYEGNSTMKREFSSSPKIK LWTIEKESAITCEPSKEVGLEFEKPDPVYLEGNGDCNVSSLRPKICVTVCKDESENVWRCRVVSVSAGAKLTMYEGIYVN PYVDPPLNEEEATEAVNEMNGYQSRAEVGTWHTPQASLAHEEHHRRQWEDAYKFYWKDSKIQEMLENQTISCDKEPNMDE AVKFMQALANEMALDLWKETSDYVLALPDDANDRPYCAGQEVLNEATAYVIRLADAMGWNNVPRFITKPGTIEPPCFMPP VSEGKTRSMAIAEESTPLQISIVDTSQFTEGKITVRFCNEGNEPVRIPDEINDETSDFFFVTVLRTQQGKMRVLNREIGT MTFQRPLNYRELAPGQEYSVTIPACLDEVDLEGWKQCSCELETRYYNQQGKDCFLGVLRATARFTLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61620; Mature: 61620
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNYIPINKAVNPVYIYQGNEPLISKTLGVDAMTFNFDGSACEHATCTGAPEMFIKVEED CCCCCCCCCCCCEEEEEECCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC GLYYFGVEADDTGSLTIAGEQAIKKDGIPPNGKLNIETDSRYLKAGYYKVALSYTNNAYT CEEEEEEECCCCCCEEEECCHHHHHCCCCCCCEEEEEECCCEEECCEEEEEEEECCCCCC PVSNNAIAFNVTMDREPIQAGKYEGNSTMKREFSSSPKIKLWTIEKESAITCEPSKEVGL CCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCEEEECCCHHHCE EFEKPDPVYLEGNGDCNVSSLRPKICVTVCKDESENVWRCRVVSVSAGAKLTMYEGIYVN EECCCCCEEEECCCCCCHHCCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCEEEC PYVDPPLNEEEATEAVNEMNGYQSRAEVGTWHTPQASLAHEEHHRRQWEDAYKFYWKDSK CCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCHH IQEMLENQTISCDKEPNMDEAVKFMQALANEMALDLWKETSDYVLALPDDANDRPYCAGQ HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH EVLNEATAYVIRLADAMGWNNVPRFITKPGTIEPPCFMPPVSEGKTRSMAIAEESTPLQI HHHHHHHHEEHHHHHHCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE SIVDTSQFTEGKITVRFCNEGNEPVRIPDEINDETSDFFFVTVLRTQQGKMRVLNREIGT EEEECCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEECCCCCEEEHHHHHCC MTFQRPLNYRELAPGQEYSVTIPACLDEVDLEGWKQCSCELETRYYNQQGKDCFLGVLRA EEEECCCCHHHCCCCCCEEEEHHHHHCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHH TARFTLQ HEEEECC >Mature Secondary Structure MNNYIPINKAVNPVYIYQGNEPLISKTLGVDAMTFNFDGSACEHATCTGAPEMFIKVEED CCCCCCCCCCCCEEEEEECCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC GLYYFGVEADDTGSLTIAGEQAIKKDGIPPNGKLNIETDSRYLKAGYYKVALSYTNNAYT CEEEEEEECCCCCCEEEECCHHHHHCCCCCCCEEEEEECCCEEECCEEEEEEEECCCCCC PVSNNAIAFNVTMDREPIQAGKYEGNSTMKREFSSSPKIKLWTIEKESAITCEPSKEVGL CCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCEEEECCCHHHCE EFEKPDPVYLEGNGDCNVSSLRPKICVTVCKDESENVWRCRVVSVSAGAKLTMYEGIYVN EECCCCCEEEECCCCCCHHCCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCEEEC PYVDPPLNEEEATEAVNEMNGYQSRAEVGTWHTPQASLAHEEHHRRQWEDAYKFYWKDSK CCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCHH IQEMLENQTISCDKEPNMDEAVKFMQALANEMALDLWKETSDYVLALPDDANDRPYCAGQ HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH EVLNEATAYVIRLADAMGWNNVPRFITKPGTIEPPCFMPPVSEGKTRSMAIAEESTPLQI HHHHHHHHEEHHHHHHCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE SIVDTSQFTEGKITVRFCNEGNEPVRIPDEINDETSDFFFVTVLRTQQGKMRVLNREIGT EEEECCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEECCCCCEEEHHHHHCC MTFQRPLNYRELAPGQEYSVTIPACLDEVDLEGWKQCSCELETRYYNQQGKDCFLGVLRA EEEECCCCHHHCCCCCCEEEEHHHHHCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHH TARFTLQ HEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA