| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is yebN [C]
Identifier: 187734540
GI number: 187734540
Start: 30657
End: 31256
Strand: Direct
Name: yebN [C]
Synonym: Amuc_0024
Alternate gene names: 187734540
Gene position: 30657-31256 (Clockwise)
Preceding gene: 187734539
Following gene: 187734541
Centisome position: 1.15
GC content: 60.33
Gene sequence:
>600_bases ATGAGCATGCCGCTTGCCGACTTGATCTTCCTGGCTTTTGCCCTCTCCGTGGACGCTTTCGTCGTGGCGTTCTCCTACGG CCTGCTCATTAAGCAAAAGCGTTTGAGCAACGGAATCAAGCTCTCCCTGTCCACCGGGGCCGGTCAATTCCTGATGCCCG TCCTGGGTTTTCTGCTTACAGGCTCCGTGCACCGGTATATTGCGGCCTGGGACCACTGGCTGGGCTTCGCCGTGTTCACC TTCCTCGGGGTCAACGTCCTCCGCGAAGGCTGGAATCACCGCAACGAAGAAGAGGATATGCCCCACGTCACCAGCCTGAC GTTTCCTACCCTTATGGCCGTGGGAATCGCCACCAGCATCGACGCGCTGGTAGCGGGCATCAGCATTTACCTTTCATCCG CCCAGTGTGGAACCGACCCTACCCTCCACGCGGTGCTTCTCCCCGCCGCCGCCATCGGCTTCACCACCTTCCTGTGCACG GCGGCCGGCTTTTTCCTGACCAGACGGCTGCACCGCTTTCCGACCTTTCATCTGGAAGCGGGAGCCGGGCTCATCCTCAT CGGCCTGGGCGTCAAAATGCTCTGTGACCATTTGTGCTGA
Upstream 100 bases:
>100_bases AATCCAGCCGACCCGCCTGTGCCGCATTTGGAATCAGGAAAAAGCGCAAGGAACAAAAAAATTGCTTTTTCCCGGGGATA TCCTAGAGTGCCTCTCCGCA
Downstream 100 bases:
>100_bases AATATGCCGCGAAGGATGATAAAAACGTCCTTCTGGCATCGTAATAAGTCGAAAAACGCACTGGTTCCCTCCCACCTCTT TCTGCTATTATCAAGTAATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MSMPLADLIFLAFALSVDAFVVAFSYGLLIKQKRLSNGIKLSLSTGAGQFLMPVLGFLLTGSVHRYIAAWDHWLGFAVFT FLGVNVLREGWNHRNEEEDMPHVTSLTFPTLMAVGIATSIDALVAGISIYLSSAQCGTDPTLHAVLLPAAAIGFTTFLCT AAGFFLTRRLHRFPTFHLEAGAGLILIGLGVKMLCDHLC
Sequences:
>Translated_199_residues MSMPLADLIFLAFALSVDAFVVAFSYGLLIKQKRLSNGIKLSLSTGAGQFLMPVLGFLLTGSVHRYIAAWDHWLGFAVFT FLGVNVLREGWNHRNEEEDMPHVTSLTFPTLMAVGIATSIDALVAGISIYLSSAQCGTDPTLHAVLLPAAAIGFTTFLCT AAGFFLTRRLHRFPTFHLEAGAGLILIGLGVKMLCDHLC >Mature_198_residues SMPLADLIFLAFALSVDAFVVAFSYGLLIKQKRLSNGIKLSLSTGAGQFLMPVLGFLLTGSVHRYIAAWDHWLGFAVFTF LGVNVLREGWNHRNEEEDMPHVTSLTFPTLMAVGIATSIDALVAGISIYLSSAQCGTDPTLHAVLLPAAAIGFTTFLCTA AGFFLTRRLHRFPTFHLEAGAGLILIGLGVKMLCDHLC
Specific function: Unknown
COG id: COG1971
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0059 family [H]
Homologues:
Organism=Escherichia coli, GI87081981, Length=195, Percent_Identity=27.6923076923077, Blast_Score=87, Evalue=8e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003810 - InterPro: IPR022929 [H]
Pfam domain/function: PF02659 DUF204 [H]
EC number: NA
Molecular weight: Translated: 21502; Mature: 21370
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMPLADLIFLAFALSVDAFVVAFSYGLLIKQKRLSNGIKLSLSTGAGQFLMPVLGFLLT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH GSVHRYIAAWDHWLGFAVFTFLGVNVLREGWNHRNEEEDMPHVTSLTFPTLMAVGIATSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DALVAGISIYLSSAQCGTDPTLHAVLLPAAAIGFTTFLCTAAGFFLTRRLHRFPTFHLEA HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC GAGLILIGLGVKMLCDHLC CCCEEEEHHCHHHHHHHCC >Mature Secondary Structure SMPLADLIFLAFALSVDAFVVAFSYGLLIKQKRLSNGIKLSLSTGAGQFLMPVLGFLLT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH GSVHRYIAAWDHWLGFAVFTFLGVNVLREGWNHRNEEEDMPHVTSLTFPTLMAVGIATSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DALVAGISIYLSSAQCGTDPTLHAVLLPAAAIGFTTFLCTAAGFFLTRRLHRFPTFHLEA HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC GAGLILIGLGVKMLCDHLC CCCEEEEHHCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA