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The map label for this gene is yddE [C]

Identifier: 187734539

GI number: 187734539

Start: 29374

End: 30150

Strand: Direct

Name: yddE [C]

Synonym: Amuc_0023

Alternate gene names: 187734539

Gene position: 29374-30150 (Clockwise)

Preceding gene: 187734538

Following gene: 187734540

Centisome position: 1.1

GC content: 45.17

Gene sequence:

>777_bases
ATGAAACAATATATCATAGACGCCTTTACTGACAAAGTTTTTCATGGAAATCCCACGGCGATTTGCATTTTAGAACAATG
GCCGTCCGGGGAATTGATGTTAAATATGGCCGTTGAAAACAATCTTTCAGAAACGGCCTTTGCTGTCAAAAAGGGGGGGA
GCTATCATCTGCGGTGGTTTACCCCCGGTGGAGAGATTGACTTATGCGGTCATGCGACATTAGCCTGTGCCTATGTTATT
TTGAACTTCTATGAAAAAGAAGCGGCAAAAGTTGTTTTTCAAACTTTAAGCGGTGATTTGGTGGTAGAACGGCATGGTGA
TCTTTATGAAATGGATTTCCCCGCCTATGAATTAAAACCAGTTCCCGTAACGGAGCAAATGATCGACGCTATCGGCGCTA
CCCCCAGAGAAGCGTATATGGGGCGTGACCTTTTATGCGTGTTTGACGATATAAAAATAATCGAACATCTCAATCCGGAT
CTATCAAAAGTTCATGCCCTGAACGGTCTTTTGCTCCATGTAACCGCAAAAGGTACGGAAACTGACTGCGTTTCCCGTAC
CTTTGCCCCCAAATGCGGAGTGCCGGAGGATGCCGTTTGTGGTTCCGGTCATTGTCACATTATACCTTACTGGGCGAACA
GATTGGGAAAAGACGACATCATAGCTTATCAGGCTTCCAAACGCGGTGGGACACTTTATTGCCGCATGGATGGAGCACGG
GTAAAATTAGCAGGAAAAGCAGCCTTATATTCCATTGCCGAAACACAATCAAGATGA

Upstream 100 bases:

>100_bases
TACCGCCAAGCCCGCAAAAAGCTGCATGGATGCCAGGGCCCGCGTCTGAAAATTTTGCGCAGAACCGAAGTTGCAGTTGA
TTTGGAATAAATATATTATA

Downstream 100 bases:

>100_bases
AGCGTCAATAGGTTAAGAACATATGCCGGGCGACGGAAAAAACGTCGCGCGACAGAAATTATACATGCCCAATGACACAA
ACGGCGGTTTTGAATAATCA

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MKQYIIDAFTDKVFHGNPTAICILEQWPSGELMLNMAVENNLSETAFAVKKGGSYHLRWFTPGGEIDLCGHATLACAYVI
LNFYEKEAAKVVFQTLSGDLVVERHGDLYEMDFPAYELKPVPVTEQMIDAIGATPREAYMGRDLLCVFDDIKIIEHLNPD
LSKVHALNGLLLHVTAKGTETDCVSRTFAPKCGVPEDAVCGSGHCHIIPYWANRLGKDDIIAYQASKRGGTLYCRMDGAR
VKLAGKAALYSIAETQSR

Sequences:

>Translated_258_residues
MKQYIIDAFTDKVFHGNPTAICILEQWPSGELMLNMAVENNLSETAFAVKKGGSYHLRWFTPGGEIDLCGHATLACAYVI
LNFYEKEAAKVVFQTLSGDLVVERHGDLYEMDFPAYELKPVPVTEQMIDAIGATPREAYMGRDLLCVFDDIKIIEHLNPD
LSKVHALNGLLLHVTAKGTETDCVSRTFAPKCGVPEDAVCGSGHCHIIPYWANRLGKDDIIAYQASKRGGTLYCRMDGAR
VKLAGKAALYSIAETQSR
>Mature_258_residues
MKQYIIDAFTDKVFHGNPTAICILEQWPSGELMLNMAVENNLSETAFAVKKGGSYHLRWFTPGGEIDLCGHATLACAYVI
LNFYEKEAAKVVFQTLSGDLVVERHGDLYEMDFPAYELKPVPVTEQMIDAIGATPREAYMGRDLLCVFDDIKIIEHLNPD
LSKVHALNGLLLHVTAKGTETDCVSRTFAPKCGVPEDAVCGSGHCHIIPYWANRLGKDDIIAYQASKRGGTLYCRMDGAR
VKLAGKAALYSIAETQSR

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=276, Percent_Identity=36.5942028985507, Blast_Score=140, Evalue=8e-34,
Organism=Homo sapiens, GI74316009, Length=245, Percent_Identity=35.1020408163265, Blast_Score=123, Evalue=1e-28,
Organism=Escherichia coli, GI1787737, Length=297, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17542160, Length=304, Percent_Identity=31.25, Blast_Score=130, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17542154, Length=304, Percent_Identity=31.25, Blast_Score=130, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17542158, Length=300, Percent_Identity=31.6666666666667, Blast_Score=123, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=300, Percent_Identity=31.6666666666667, Blast_Score=123, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=230, Percent_Identity=28.695652173913, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28463; Mature: 28463

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQYIIDAFTDKVFHGNPTAICILEQWPSGELMLNMAVENNLSETAFAVKKGGSYHLRWF
CCCEEEEHHHCCEECCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHEEECCCCEEEEEE
TPGGEIDLCGHATLACAYVILNFYEKEAAKVVFQTLSGDLVVERHGDLYEMDFPAYELKP
CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEEC
VPVTEQMIDAIGATPREAYMGRDLLCVFDDIKIIEHLNPDLSKVHALNGLLLHVTAKGTE
CCCHHHHHHHHCCCCHHHHCCCCEEEEEHHHHHHHHCCCCHHHHHHHCCEEEEEEECCCC
TDCVSRTFAPKCGVPEDAVCGSGHCHIIPYWANRLGKDDIIAYQASKRGGTLYCRMDGAR
CHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEEECCCCCEEEEEECCCE
VKLAGKAALYSIAETQSR
EEEECHHHHHHHHHHCCC
>Mature Secondary Structure
MKQYIIDAFTDKVFHGNPTAICILEQWPSGELMLNMAVENNLSETAFAVKKGGSYHLRWF
CCCEEEEHHHCCEECCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHEEECCCCEEEEEE
TPGGEIDLCGHATLACAYVILNFYEKEAAKVVFQTLSGDLVVERHGDLYEMDFPAYELKP
CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEEC
VPVTEQMIDAIGATPREAYMGRDLLCVFDDIKIIEHLNPDLSKVHALNGLLLHVTAKGTE
CCCHHHHHHHHCCCCHHHHCCCCEEEEEHHHHHHHHCCCCHHHHHHHCCEEEEEEECCCC
TDCVSRTFAPKCGVPEDAVCGSGHCHIIPYWANRLGKDDIIAYQASKRGGTLYCRMDGAR
CHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEEECCCCCEEEEEECCCE
VKLAGKAALYSIAETQSR
EEEECHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]