| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186477803
Identifier: 186477803
GI number: 186477803
Start: 3435306
End: 3435788
Strand: Reverse
Name: 186477803
Synonym: Bphy_3059
Alternate gene names: NA
Gene position: 3435788-3435306 (Counterclockwise)
Preceding gene: 186477804
Following gene: 186477800
Centisome position: 98.75
GC content: 58.18
Gene sequence:
>483_bases ATGAGTTCACGCAGGATCGCTGTGCGTCAATCGGGCGTGCACGGCAAAGGCGTGTTTGCACTCGAACCGATCGCCGCCGG CGATCGGCTGATCGAATATAAGGGCGAACGGATCTCGTGGAAGGAAGCGCTGCGACGACATCCCCACAATCCGGACGAGC CGAATCACACGTTCTATTTCGCGCTCGATAGCGGTGATGTGATCGACGGCAAGGTGAAGGGCAATAGCGCGCGATGGATC AACCACTCGTGCGCGCCCAACTGTGAAGCGGAAGAGATTGACGGCCATGTCTATATTGACGCGCTGCGCGACATCGAAGC CGGCGAAGAACTGTTCTACGACTACGGGCTCGTGATCGACGCGCGTCAGACGAAGAAGCTGAAGAAGGAATACGAATGCC GCTGCGGCGCGCGCAAGTGCCGCGGCACGATGCTTGCGCCGCCGGACAAGAAAGACGAGAAGAAATCGAAGAAGAAGAAG TGA
Upstream 100 bases:
>100_bases ATCCGCATCACGAAAGCCGTGCAGTTGTGGAGATGGCGCGAAACGCGGAAGCATCGGCAAACAGAGTTTGCTCATCCACC GTTCTACAAGGATTGATTCA
Downstream 100 bases:
>100_bases TTGAGGTGCGCTGCCGGACATAGAGCAACGGCAGCGCGCTCTGGCGATGAAGTTCAGAGATCGACCGGCGCATGCGCCGG TTTTTTTGTTTCTCGAGCTG
Product: nuclear protein SET
Products: NA
Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYFALDSGDVIDGKVKGNSARWI NHSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVIDARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK
Sequences:
>Translated_160_residues MSSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYFALDSGDVIDGKVKGNSARWI NHSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVIDARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK >Mature_159_residues SSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYFALDSGDVIDGKVKGNSARWIN HSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVIDARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK
Specific function: Unknown
COG id: COG2940
COG function: function code R; Proteins containing SET domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI56550039, Length=144, Percent_Identity=38.8888888888889, Blast_Score=98, Evalue=4e-21, Organism=Homo sapiens, GI110349788, Length=134, Percent_Identity=39.5522388059701, Blast_Score=92, Evalue=2e-19, Organism=Homo sapiens, GI7662046, Length=144, Percent_Identity=38.1944444444444, Blast_Score=91, Evalue=4e-19, Organism=Homo sapiens, GI210032580, Length=139, Percent_Identity=37.410071942446, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI91718902, Length=143, Percent_Identity=36.3636363636364, Blast_Score=81, Evalue=5e-16, Organism=Homo sapiens, GI19913358, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14, Organism=Homo sapiens, GI19913350, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14, Organism=Homo sapiens, GI19913348, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14, Organism=Homo sapiens, GI109633019, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14, Organism=Homo sapiens, GI55741677, Length=146, Percent_Identity=32.1917808219178, Blast_Score=75, Evalue=2e-14, Organism=Homo sapiens, GI23510384, Length=118, Percent_Identity=38.9830508474576, Blast_Score=73, Evalue=9e-14, Organism=Homo sapiens, GI21361095, Length=118, Percent_Identity=38.9830508474576, Blast_Score=73, Evalue=9e-14, Organism=Homo sapiens, GI19923202, Length=116, Percent_Identity=39.6551724137931, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI19923586, Length=135, Percent_Identity=34.8148148148148, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI27477095, Length=135, Percent_Identity=34.8148148148148, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI148762969, Length=143, Percent_Identity=34.2657342657343, Blast_Score=68, Evalue=3e-12, Organism=Homo sapiens, GI13699811, Length=155, Percent_Identity=34.1935483870968, Blast_Score=67, Evalue=5e-12, Organism=Homo sapiens, GI197313748, Length=159, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI45356743, Length=111, Percent_Identity=37.8378378378378, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI156142199, Length=149, Percent_Identity=32.8859060402685, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI4507321, Length=163, Percent_Identity=30.0613496932515, Blast_Score=63, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17552316, Length=144, Percent_Identity=35.4166666666667, Blast_Score=83, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17552320, Length=146, Percent_Identity=34.9315068493151, Blast_Score=82, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17552318, Length=146, Percent_Identity=34.9315068493151, Blast_Score=82, Evalue=9e-17, Organism=Caenorhabditis elegans, GI193210440, Length=143, Percent_Identity=34.965034965035, Blast_Score=77, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71993684, Length=140, Percent_Identity=33.5714285714286, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25148426, Length=137, Percent_Identity=37.956204379562, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25148423, Length=137, Percent_Identity=37.956204379562, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565204, Length=161, Percent_Identity=31.055900621118, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71988186, Length=138, Percent_Identity=35.5072463768116, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6321911, Length=144, Percent_Identity=38.1944444444444, Blast_Score=91, Evalue=6e-20, Organism=Saccharomyces cerevisiae, GI6322293, Length=147, Percent_Identity=31.9727891156463, Blast_Score=63, Evalue=2e-11, Organism=Drosophila melanogaster, GI62472551, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI17136558, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI19550181, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=5e-20, Organism=Drosophila melanogaster, GI19550184, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI17136556, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI17737643, Length=134, Percent_Identity=37.3134328358209, Blast_Score=84, Evalue=6e-17, Organism=Drosophila melanogaster, GI24650756, Length=147, Percent_Identity=36.0544217687075, Blast_Score=83, Evalue=9e-17, Organism=Drosophila melanogaster, GI24639197, Length=143, Percent_Identity=34.965034965035, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI28571451, Length=143, Percent_Identity=34.965034965035, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI24641786, Length=143, Percent_Identity=34.965034965035, Blast_Score=76, Evalue=9e-15, Organism=Drosophila melanogaster, GI281360813, Length=143, Percent_Identity=34.965034965035, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI161078181, Length=155, Percent_Identity=33.5483870967742, Blast_Score=67, Evalue=6e-12, Organism=Drosophila melanogaster, GI221331070, Length=116, Percent_Identity=37.9310344827586, Blast_Score=66, Evalue=8e-12, Organism=Drosophila melanogaster, GI24662251, Length=116, Percent_Identity=37.9310344827586, Blast_Score=66, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18173; Mature: 18042
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: PS50280 SET ; PS50868 POST_SET
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYF CCCCEEEEEECCCCCCCEEEECCCCCCCEEEEECCCEECHHHHHHCCCCCCCCCCCEEEE ALDSGDVIDGKVKGNSARWINHSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVID EECCCCEEECEEECCCCEEECCCCCCCCCHHHCCCEEEEEEHHCCCCCHHHEECCCEEEE ARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK CHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHCCC >Mature Secondary Structure SSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYF CCCEEEEEECCCCCCCEEEECCCCCCCEEEEECCCEECHHHHHHCCCCCCCCCCCEEEE ALDSGDVIDGKVKGNSARWINHSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVID EECCCCEEECEEECCCCEEECCCCCCCCCHHHCCCEEEEEEHHCCCCCHHHEECCCEEEE ARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK CHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA