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The map label for this gene is ywbI [H]

Identifier: 186477796

GI number: 186477796

Start: 3429851

End: 3430750

Strand: Direct

Name: ywbI [H]

Synonym: Bphy_3052

Alternate gene names: 186477796

Gene position: 3429851-3430750 (Clockwise)

Preceding gene: 186477770

Following gene: 186477797

Centisome position: 98.58

GC content: 64.56

Gene sequence:

>900_bases
ATGGATCTCACCCTGCTCCGCGCATTTGCAACGGTCGCACGCGAAGGCAATCTGACGCGCGCCGCTACACAATTGCATCT
GACGCAACCGGCGGTCAGTTTGCAGATCAAGAATCTGCAGATTGCCCTCGGCGTGGCGCTTTTCACGCGCACGTCGCACG
GGCTCGCGCTGACACGCGACGGTCAGGCGCTGCTGCCTCATGCCGAGCGTGCGCTGGCAGCCGCAAGCGATGTCGAACGC
GCGGCGGCCACGCTGCGCCAGGAAGTGCGTGGACGCCTGCGCATCGGCACGATTCTCGATCCCGCCTTTTTGCGGCTCGG
CGGCTTCCTGAAACAGCTGGTCGAAACCTGGCCGCATGTCGAAACGCAACTCAGGCACGGCATGTCGGGCTGGGTGCGCG
ACCAGGTGCGTGCCGGCGAACTGGACGTCGGCTATTACATCGGCCAGCCCGATGACGACGACGCGCGGGACACGCCCATC
TTTCATGCCGTCACGCTCACGCACTTTCAGTATCGCGTGCTGGCGCCGCCCGGCTGGAAAGACCGCATGAAGGGCGCGCA
TGACTGGCGCGCACTCGCTTTGTTTCCCTGGATCTGGACGCCACCCGCGTCCGCGCACAACCGGCTGCTGACGCGCCGTT
TCGCCGATGCCGGGGTCAGGCCTATCAAAGTAGCGGAAGTGGATCAGGAACCGTCGATGCTCGATCTCGTCAAATCCGGC
ATCGGCCTTACGCTCGCGCGAGATTCGATTGCGCTCGCCGAAGCGCACGCGCATGCGCTGACGATCGTCGAAGACGTCAC
GGTGCCGACAGAACTGACGTTCATCACGCTCGCGGCGCACCGGGACGAGCCAGCGATCGCTGCCGCACTGAAGCTGATCG
AGCTGCAATGGTCGACGTGA

Upstream 100 bases:

>100_bases
TCACGCCTACGCATGGTGTTCTTTAGATTTAATCGCGACGCATGCCGCAAATCCAATGAGTAATGCTCAAATACGGTATA
AGGCGCGCTAATATCAGCGC

Downstream 100 bases:

>100_bases
GCGGCTTCCTGCGTCGCACGCGATATGAGCCCGCCTCATGACACAGCGGTTTCGGCACCTGTTTTTGGTCCCTTTTTGCA
CGCCGTGGGCTTTAACTACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDLTLLRAFATVAREGNLTRAATQLHLTQPAVSLQIKNLQIALGVALFTRTSHGLALTRDGQALLPHAERALAAASDVER
AAATLRQEVRGRLRIGTILDPAFLRLGGFLKQLVETWPHVETQLRHGMSGWVRDQVRAGELDVGYYIGQPDDDDARDTPI
FHAVTLTHFQYRVLAPPGWKDRMKGAHDWRALALFPWIWTPPASAHNRLLTRRFADAGVRPIKVAEVDQEPSMLDLVKSG
IGLTLARDSIALAEAHAHALTIVEDVTVPTELTFITLAAHRDEPAIAAALKLIELQWST

Sequences:

>Translated_299_residues
MDLTLLRAFATVAREGNLTRAATQLHLTQPAVSLQIKNLQIALGVALFTRTSHGLALTRDGQALLPHAERALAAASDVER
AAATLRQEVRGRLRIGTILDPAFLRLGGFLKQLVETWPHVETQLRHGMSGWVRDQVRAGELDVGYYIGQPDDDDARDTPI
FHAVTLTHFQYRVLAPPGWKDRMKGAHDWRALALFPWIWTPPASAHNRLLTRRFADAGVRPIKVAEVDQEPSMLDLVKSG
IGLTLARDSIALAEAHAHALTIVEDVTVPTELTFITLAAHRDEPAIAAALKLIELQWST
>Mature_299_residues
MDLTLLRAFATVAREGNLTRAATQLHLTQPAVSLQIKNLQIALGVALFTRTSHGLALTRDGQALLPHAERALAAASDVER
AAATLRQEVRGRLRIGTILDPAFLRLGGFLKQLVETWPHVETQLRHGMSGWVRDQVRAGELDVGYYIGQPDDDDARDTPI
FHAVTLTHFQYRVLAPPGWKDRMKGAHDWRALALFPWIWTPPASAHNRLLTRRFADAGVRPIKVAEVDQEPSMLDLVKSG
IGLTLARDSIALAEAHAHALTIVEDVTVPTELTFITLAAHRDEPAIAAALKLIELQWST

Specific function: Positive Regulator Required For The Expression Of Xapa And Xapb. Binds To The Inducer Xanthosine. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI2367136, Length=251, Percent_Identity=28.2868525896414, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=35.5072463768116, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787806, Length=250, Percent_Identity=23.6, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI145693105, Length=244, Percent_Identity=23.3606557377049, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=173, Percent_Identity=31.7919075144509, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082132, Length=153, Percent_Identity=30.718954248366, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786401, Length=273, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=251, Percent_Identity=25.0996015936255, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=146, Percent_Identity=33.5616438356164, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI48994962, Length=69, Percent_Identity=49.2753623188406, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786448, Length=198, Percent_Identity=28.7878787878788, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=254, Percent_Identity=26.7716535433071, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32968; Mature: 32968

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTLLRAFATVAREGNLTRAATQLHLTQPAVSLQIKNLQIALGVALFTRTSHGLALTRD
CCHHHHHHHHHHHHCCCCCHHHHEEEEECCCEEEEEECEEEEEEEHHEEECCCCEEEECC
GQALLPHAERALAAASDVERAAATLRQEVRGRLRIGTILDPAFLRLGGFLKQLVETWPHV
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCH
ETQLRHGMSGWVRDQVRAGELDVGYYIGQPDDDDARDTPIFHAVTLTHFQYRVLAPPGWK
HHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCCHH
DRMKGAHDWRALALFPWIWTPPASAHNRLLTRRFADAGVRPIKVAEVDQEPSMLDLVKSG
HHCCCCCCCEEEEEECEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCC
IGLTLARDSIALAEAHAHALTIVEDVTVPTELTFITLAAHRDEPAIAAALKLIELQWST
CCEEEECCCHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHEEEECC
>Mature Secondary Structure
MDLTLLRAFATVAREGNLTRAATQLHLTQPAVSLQIKNLQIALGVALFTRTSHGLALTRD
CCHHHHHHHHHHHHCCCCCHHHHEEEEECCCEEEEEECEEEEEEEHHEEECCCCEEEECC
GQALLPHAERALAAASDVERAAATLRQEVRGRLRIGTILDPAFLRLGGFLKQLVETWPHV
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCH
ETQLRHGMSGWVRDQVRAGELDVGYYIGQPDDDDARDTPIFHAVTLTHFQYRVLAPPGWK
HHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCCHH
DRMKGAHDWRALALFPWIWTPPASAHNRLLTRRFADAGVRPIKVAEVDQEPSMLDLVKSG
HHCCCCCCCEEEEEECEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCC
IGLTLARDSIALAEAHAHALTIVEDVTVPTELTFITLAAHRDEPAIAAALKLIELQWST
CCEEEECCCHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]