Click here to switch to the map view.

The map label for this gene is atpD1 [H]

Identifier: 186477773

GI number: 186477773

Start: 3401310

End: 3402704

Strand: Reverse

Name: atpD1 [H]

Synonym: Bphy_3027

Alternate gene names: 186477773

Gene position: 3402704-3401310 (Counterclockwise)

Preceding gene: 186477774

Following gene: 186477772

Centisome position: 97.8

GC content: 61.22

Gene sequence:

>1395_bases
ATGAGTACTACTGCTTTGGTAGAAGGCAAGATCGTACAGTGCATCGGCGCGGTGATCGACGTGGAATTCCCGCGTGAGCA
CATGCCGAAGGTTTACGACGCGCTCATTCTCGAAGGTTCGGAACTGACGCTCGAAGTCCAGCAGCAGCTGGGCGACGGCG
TCGTCCGTACCATCTGTCTGGGTTCGTCGGACGGTCTGCGCCGCGGCGTGATCGTCAAGAACACGGCCAAGCCGATTAGC
GTGCCCGTCGGCAAGCCGACGCTCGGCCGCATCATGGACGTGCTGGGTCGTCCGATCGACGAAGCCGGCCCGATCGCGAG
CGACAACATGCGCTCGATCCACCAGAAGGCGCCGGCGTTCGACGAACTGTCGCCGTCGACGGAACTGCTTGAAACGGGTA
TCAAGGTTATCGATCTGATCTGCCCGTTCGCGAAGGGCGGCAAGGTGGGTCTGTTCGGCGGTGCCGGCGTGGGCAAGACC
GTCAACATGATGGAGCTCATCAACAACATCGCGAAGGAGCACGGCGGTTACTCCGTGTTCGCGGGCGTGGGCGAGCGTAC
CCGCGAAGGGAACGACTTCTACCACGAAATGAAGGACTCGAACGTTCTCGACAAGGTCGCGCTGGTGTACGGCCAGATGA
ACGAACCGCCGGGCAACCGTCTGCGCGTCGCGCTGACGGGTCTGACGATGGCCGAACACTTCCGTGACGAAGGCCTCGAC
GTGCTGTTCTTCGTCGACAACATCTACCGTTTCACGTTGGCCGGTACGGAAGTGTCGGCACTGCTGGGCCGTATGCCTTC
CGCAGTGGGCTATCAGCCGACGCTGGCTGAAGAAATGGGCAAGCTGCAAGAGCGTATTACCTCGACGAAGACGGGCTCGA
TCACGTCGGTTCAGGCCGTGTACGTCCCTGCGGACGACTTGACGGACCCGTCGCCGGCTACGACATTCGGCCACCTGGAC
GCAACGGTCGTTCTGTCGCGTGACATCGCTTCGCTGGGCATCTACCCGGCTGTCGACCCGCTCGACTCGACCTCGCGTCA
GATCGACCCGCACGTGATCGGCGAAGAGCATTACTCGATCACGCGTGGCGTTCAGCAGACGCTGCAGCGCTACAAGGAAT
TGCGCGACATTATCGCGATTCTGGGCATGGACGAACTGTCGCCGGAAGACAAGCTGTCGGTCGCGCGCGCTCGCAAGATC
CAGCGTTTCCTGTCGCAGCCGTTCCACGTGGCTGAAGTGTTCACGGGCTCGCCGGGCAAGTACGTGCCGCTGAAGGAAAC
GATCCGTGGCTTCAAGATGATCGTCGAAGGCGAGTGCGATCACCTGCCGGAGCAGGCGTTCTACATGGTCGGCACGATCG
ACGAAGCCTTCGAAAAGGCCAAGAAGATCCAGTAA

Upstream 100 bases:

>100_bases
GGCAGTCTGACGAGATGTCGACACGCGGAAGCGCCTTTGGCGAGTCCACCGAAACTGCGCCGTTGCGCGAGTGAAGAATT
GAGTATCTAAAGGAAAAGCG

Downstream 100 bases:

>100_bases
AGGCTGGGTGTAACGAAGCGGGCGCCGGCTCGCGCCTGGTTGCCGCCGCAAAAGGGGGCAGTCGGCGAAGCGGGCGCCTC
GTCCTACGCTCAACCATGGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MSTTALVEGKIVQCIGAVIDVEFPREHMPKVYDALILEGSELTLEVQQQLGDGVVRTICLGSSDGLRRGVIVKNTAKPIS
VPVGKPTLGRIMDVLGRPIDEAGPIASDNMRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKT
VNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFGHLD
ATVVLSRDIASLGIYPAVDPLDSTSRQIDPHVIGEEHYSITRGVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKI
QRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVEGECDHLPEQAFYMVGTIDEAFEKAKKIQ

Sequences:

>Translated_464_residues
MSTTALVEGKIVQCIGAVIDVEFPREHMPKVYDALILEGSELTLEVQQQLGDGVVRTICLGSSDGLRRGVIVKNTAKPIS
VPVGKPTLGRIMDVLGRPIDEAGPIASDNMRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKT
VNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFGHLD
ATVVLSRDIASLGIYPAVDPLDSTSRQIDPHVIGEEHYSITRGVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKI
QRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVEGECDHLPEQAFYMVGTIDEAFEKAKKIQ
>Mature_463_residues
STTALVEGKIVQCIGAVIDVEFPREHMPKVYDALILEGSELTLEVQQQLGDGVVRTICLGSSDGLRRGVIVKNTAKPISV
PVGKPTLGRIMDVLGRPIDEAGPIASDNMRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTV
NMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLDV
LFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFGHLDA
TVVLSRDIASLGIYPAVDPLDSTSRQIDPHVIGEEHYSITRGVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQ
RFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVEGECDHLPEQAFYMVGTIDEAFEKAKKIQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=464, Percent_Identity=69.3965517241379, Blast_Score=646, Evalue=0.0,
Organism=Homo sapiens, GI50345984, Length=321, Percent_Identity=26.4797507788162, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI4757810, Length=321, Percent_Identity=26.4797507788162, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI19913424, Length=323, Percent_Identity=27.8637770897833, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI19913428, Length=421, Percent_Identity=24.9406175771971, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI19913426, Length=403, Percent_Identity=23.5732009925558, Blast_Score=97, Evalue=4e-20,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=81.304347826087, Blast_Score=756, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=305, Percent_Identity=31.1475409836066, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI1790172, Length=339, Percent_Identity=25.9587020648968, Blast_Score=120, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=68.3651804670913, Blast_Score=645, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=319, Percent_Identity=29.153605015674, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71988080, Length=321, Percent_Identity=26.1682242990654, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988063, Length=321, Percent_Identity=26.1682242990654, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=347, Percent_Identity=25.9365994236311, Blast_Score=109, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=405, Percent_Identity=23.2098765432099, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=264, Percent_Identity=24.6212121212121, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=66.0831509846827, Blast_Score=612, Evalue=1e-176,
Organism=Saccharomyces cerevisiae, GI6319370, Length=419, Percent_Identity=24.8210023866348, Blast_Score=113, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6319603, Length=407, Percent_Identity=25.0614250614251, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6320016, Length=232, Percent_Identity=26.7241379310345, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=67.8879310344828, Blast_Score=633, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=466, Percent_Identity=64.3776824034335, Blast_Score=592, Evalue=1e-169,
Organism=Drosophila melanogaster, GI24583988, Length=354, Percent_Identity=26.5536723163842, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583986, Length=354, Percent_Identity=26.5536723163842, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583984, Length=354, Percent_Identity=26.5536723163842, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI20129479, Length=319, Percent_Identity=28.2131661442006, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=27.7777777777778, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI281361666, Length=413, Percent_Identity=24.455205811138, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24646341, Length=413, Percent_Identity=24.455205811138, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI17136796, Length=413, Percent_Identity=24.455205811138, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24658560, Length=321, Percent_Identity=25.5451713395639, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=46.7391304347826, Blast_Score=79, Evalue=7e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50590; Mature: 50459

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTALVEGKIVQCIGAVIDVEFPREHMPKVYDALILEGSELTLEVQQQLGDGVVRTICL
CCCCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEHEEE
GSSDGLRRGVIVKNTAKPISVPVGKPTLGRIMDVLGRPIDEAGPIASDNMRSIHQKAPAF
CCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC
DELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
AGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
ECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCE
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAV
EEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPHVIGEEHYSI
EECCCCCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHH
TRGVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHEEECCCCC
YVPLKETIRGFKMIVEGECDHLPEQAFYMVGTIDEAFEKAKKIQ
CCCHHHHHHHHHEEECCCCCCCCHHHEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STTALVEGKIVQCIGAVIDVEFPREHMPKVYDALILEGSELTLEVQQQLGDGVVRTICL
CCCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEHEEE
GSSDGLRRGVIVKNTAKPISVPVGKPTLGRIMDVLGRPIDEAGPIASDNMRSIHQKAPAF
CCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC
DELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
AGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
ECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCE
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAV
EEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPHVIGEEHYSI
EECCCCCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHH
TRGVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHEEECCCCC
YVPLKETIRGFKMIVEGECDHLPEQAFYMVGTIDEAFEKAKKIQ
CCCHHHHHHHHHEEECCCCCCCCHHHEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA