| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186477743
Identifier: 186477743
GI number: 186477743
Start: 3358300
End: 3360426
Strand: Reverse
Name: 186477743
Synonym: Bphy_2997
Alternate gene names: NA
Gene position: 3360426-3358300 (Counterclockwise)
Preceding gene: 186477744
Following gene: 186477742
Centisome position: 96.59
GC content: 66.2
Gene sequence:
>2127_bases ATGCAAGCGCCCCCCGATCACGACTCACGCACGAACGGCGACGTCCCAATGGACGCGACCGCGCACGCACCCGCGCCGCT GCCGGACTTCGATGCGTCCGCCATGTTGCAAGCTGCCTTCGCGCATCACCAGGCGGGCCGCACGGGCGAAGCCGCCGAAT GCTACAAACAGATTCTCCAGCACGACGGGATGCACCCGGATGCAATGCATTTTCTCGGCGTGCTCGCTTGCGACGTCGGT AATCTGCCAGCGGGCATCGACCTGATCGAAAAATCGATCCAGCTGCATCCGAACGCGATCTATCTGAACAACCTCGGCAA CATGCGCGGCCGCGCGCGCGACCTTCAGGGCGCGATCGCTGCGTATCGCGCGGCGCTTTCGCTCGCGCCCGATTACGCGC AAGCGCACAGCAACCTCGGCCACACGCTGCGCGAAGCGGGCGATCCGGCGGCGGCGATCGACAGCTGCACGGTGGCCACG CGTCTCAAGCCGGATCTCCCGCAAGCTTGGACCCATCTCGGCAACGCGTTGCTGGAACTCGGCAGCGACGAGGGCGCGCT GGACAGCTACATGAAGGCGCTCGCGCTCCAGCCCAACGATGCGAACGCGCATAACAACGTCGGCAACATTCTGGAGAAGT ACGGCCGCGCAGCGGGCGCGGCCGAGTCGTATCGCCGCGCGCTCGCGCTCGAACCGCACCGCGCGTCGCTGCACAACAAT CTCGGCAATGTGCTGCGCGATCAGGGCCAGCTCGATCAGGCGACAGCGTGCTACCGGCAGGCCGTCGCGCTCGATCCCGG TTTCGCGCAGGCGCACAGCAACCTGCTGCTGCTGCTCAACTCGCGGCTCGACGTCGCGTTGCGCGAGCAGTTCGATGAAG CGCGTGCATTCGGCGAACACCAGTCCGCTAAGGCGCAGCCATTCCAGCACAGTGCAAACGCGAACGACGCAGGCAGGCGT CTGCGCGTCGGCTTCGTGTCCGGCGATCTCAACTCGCATCCCGTCGGCTTTTTCCTCGAAAGCGTGCTCGGCCATCTGGA CCGCACGCGCATCGAACTGGTCGCCTACGCGACGCGCAAACGCGAAGACGCGGTGTCGCAGCGTCTGATGCCGCAGTTCA GCGCGTGGCACGACATCTCGCGCCTCGACGACGCAGCCTGCGCGCGCCGCATCCGCGACGACGGGATCGATATTCTCGTG GACCTGTCGGGTCACACGAATCACAACCGCTTGTCCGTGTTTGCGTGGAAGCCCGCACCCGTGCAGGCGACGTGGCTCGG CTACTTCGCGACGACGGGTCTTGCCGCGATCGATTACGTGATTGCGGACCGCCACGTGCTGCCGTTGGACGAAGCGTCGC AATTCGTCGAAGCGCCGTGGCACTTGCCCGACAGCTATCTGTGCTTTACCCCGCCGCCGTTCGATATCGAGGTCGGCCCA TTGCCCGCGAGTGCGAACGGCGCGATCACGTTCGGCTGCTTCAACCATCTGGTAAAGCTCAACGAGGCCGTCGTCGCGCT GTGGGCGCGCGTGCTCGACGCCATGCCGGGTTCGCGTCTGCTGCTGAAAACGCGGCAACTCGACGACCCGGCCGTGCAGC ACGCCACCCTCGCGCGCTTCGCCGCGCACGGCATCGACGGCGCGCGTCTGATGCTCGAAGGCCAGTCGCCGCGTGCAGAA CTGCTCGCGGCGTACAACCGCGTCGACATCGCGCTCGACCCATTCCCATACGCGGGCGGCACGACGAGCATCGAAGCGTT GTGGATGGGCGTGCCCGTGCTGACGCGGCGTGGCGAACGCTTTCTGTCGCATGTCGGCGAAAGCATCGTGGATACGGTGG GCCTGCCAGACTGGATCGCGAGCGACGACGCGGACTATATCGCCAAGGCCGTTCGCGTCGGCGTGCAGCGCGACGAACTG GCGACGCTCAGACGCACATTGCGCCAACGCCTGCTGGCTTCGCCACTGTGCGACGCGCCGCGTTTCGCGCGCCATCTCGA GGACGCATTTCACGGCATGTGGGCGCGCCGCGTCGCATGCCATCAAGCAAACGACGGGCATCCCGCCCAACCGCATCGAC ATTCATCAGGGGACGCCCGCCACGCCGCGGAGCGCAATTTCGCATGA
Upstream 100 bases:
>100_bases TCGTTCGGCAGCCCGGCATGGCGCGGCGCATACGAGCGCTACATGCAGAAATACATGGGCGTCTGAGCGCGCCGTCAGCC GCATCACGTCAGGATTGCCG
Downstream 100 bases:
>100_bases CAGACTTCAATCAGAACCACAATGGCTCGTGGCAGCGCATTCCGACGCCCGCGAACTTCGGCGCGGCACCGGCACAGGCG GCGCCCGACGCGGCTGCGCA
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; TPR Domain Protein; Methyltransferase Type; Tetratricopeptide Repeat-Containing Protein; TPR Repeat Protein; SPY Protein; Glycosyltransferase TPR Domain Protein; Glycosyl Transferase Family Protein; Tpr Repeat-Containing Protein; Porphyrin Biosynthesis Protein; Transferase; Tetratricopeptide Repeat Family Protein; Sulfotransferase; Peptidase S1 And S6 Chymotrypsin/Hap; TPR Domain/SEC-C Motif Domain Protein; TPR Repeat; O-Linked N-Acetylglucosamine TransferaNDLY Family; Tetratricopeptide Repeat Protein; O-Linked Acetylglucosamine Transferase; Methyltransferase Regulatory Domain; Tetratricopeptide Domain Protein; TPR Repeat Domain-Containing Protein; TPR Repeat-Containing Glycosyl Transferase; FkbM Family Methyltransferase; O-Linked GLCNAC Transferase; Glycosyl Transferase TPR Repeat Protein
Number of amino acids: Translated: 708; Mature: 708
Protein sequence:
>708_residues MQAPPDHDSRTNGDVPMDATAHAPAPLPDFDASAMLQAAFAHHQAGRTGEAAECYKQILQHDGMHPDAMHFLGVLACDVG NLPAGIDLIEKSIQLHPNAIYLNNLGNMRGRARDLQGAIAAYRAALSLAPDYAQAHSNLGHTLREAGDPAAAIDSCTVAT RLKPDLPQAWTHLGNALLELGSDEGALDSYMKALALQPNDANAHNNVGNILEKYGRAAGAAESYRRALALEPHRASLHNN LGNVLRDQGQLDQATACYRQAVALDPGFAQAHSNLLLLLNSRLDVALREQFDEARAFGEHQSAKAQPFQHSANANDAGRR LRVGFVSGDLNSHPVGFFLESVLGHLDRTRIELVAYATRKREDAVSQRLMPQFSAWHDISRLDDAACARRIRDDGIDILV DLSGHTNHNRLSVFAWKPAPVQATWLGYFATTGLAAIDYVIADRHVLPLDEASQFVEAPWHLPDSYLCFTPPPFDIEVGP LPASANGAITFGCFNHLVKLNEAVVALWARVLDAMPGSRLLLKTRQLDDPAVQHATLARFAAHGIDGARLMLEGQSPRAE LLAAYNRVDIALDPFPYAGGTTSIEALWMGVPVLTRRGERFLSHVGESIVDTVGLPDWIASDDADYIAKAVRVGVQRDEL ATLRRTLRQRLLASPLCDAPRFARHLEDAFHGMWARRVACHQANDGHPAQPHRHSSGDARHAAERNFA
Sequences:
>Translated_708_residues MQAPPDHDSRTNGDVPMDATAHAPAPLPDFDASAMLQAAFAHHQAGRTGEAAECYKQILQHDGMHPDAMHFLGVLACDVG NLPAGIDLIEKSIQLHPNAIYLNNLGNMRGRARDLQGAIAAYRAALSLAPDYAQAHSNLGHTLREAGDPAAAIDSCTVAT RLKPDLPQAWTHLGNALLELGSDEGALDSYMKALALQPNDANAHNNVGNILEKYGRAAGAAESYRRALALEPHRASLHNN LGNVLRDQGQLDQATACYRQAVALDPGFAQAHSNLLLLLNSRLDVALREQFDEARAFGEHQSAKAQPFQHSANANDAGRR LRVGFVSGDLNSHPVGFFLESVLGHLDRTRIELVAYATRKREDAVSQRLMPQFSAWHDISRLDDAACARRIRDDGIDILV DLSGHTNHNRLSVFAWKPAPVQATWLGYFATTGLAAIDYVIADRHVLPLDEASQFVEAPWHLPDSYLCFTPPPFDIEVGP LPASANGAITFGCFNHLVKLNEAVVALWARVLDAMPGSRLLLKTRQLDDPAVQHATLARFAAHGIDGARLMLEGQSPRAE LLAAYNRVDIALDPFPYAGGTTSIEALWMGVPVLTRRGERFLSHVGESIVDTVGLPDWIASDDADYIAKAVRVGVQRDEL ATLRRTLRQRLLASPLCDAPRFARHLEDAFHGMWARRVACHQANDGHPAQPHRHSSGDARHAAERNFA >Mature_708_residues MQAPPDHDSRTNGDVPMDATAHAPAPLPDFDASAMLQAAFAHHQAGRTGEAAECYKQILQHDGMHPDAMHFLGVLACDVG NLPAGIDLIEKSIQLHPNAIYLNNLGNMRGRARDLQGAIAAYRAALSLAPDYAQAHSNLGHTLREAGDPAAAIDSCTVAT RLKPDLPQAWTHLGNALLELGSDEGALDSYMKALALQPNDANAHNNVGNILEKYGRAAGAAESYRRALALEPHRASLHNN LGNVLRDQGQLDQATACYRQAVALDPGFAQAHSNLLLLLNSRLDVALREQFDEARAFGEHQSAKAQPFQHSANANDAGRR LRVGFVSGDLNSHPVGFFLESVLGHLDRTRIELVAYATRKREDAVSQRLMPQFSAWHDISRLDDAACARRIRDDGIDILV DLSGHTNHNRLSVFAWKPAPVQATWLGYFATTGLAAIDYVIADRHVLPLDEASQFVEAPWHLPDSYLCFTPPPFDIEVGP LPASANGAITFGCFNHLVKLNEAVVALWARVLDAMPGSRLLLKTRQLDDPAVQHATLARFAAHGIDGARLMLEGQSPRAE LLAAYNRVDIALDPFPYAGGTTSIEALWMGVPVLTRRGERFLSHVGESIVDTVGLPDWIASDDADYIAKAVRVGVQRDEL ATLRRTLRQRLLASPLCDAPRFARHLEDAFHGMWARRVACHQANDGHPAQPHRHSSGDARHAAERNFA
Specific function: Unknown
COG id: COG3914
COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307148, Length=441, Percent_Identity=29.7052154195011, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI32307150, Length=441, Percent_Identity=29.7052154195011, Blast_Score=188, Evalue=2e-47, Organism=Homo sapiens, GI118766328, Length=202, Percent_Identity=30.6930693069307, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI118766330, Length=202, Percent_Identity=30.6930693069307, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI301336134, Length=208, Percent_Identity=31.25, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI83415184, Length=208, Percent_Identity=31.25, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI224809432, Length=182, Percent_Identity=28.021978021978, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI296531396, Length=212, Percent_Identity=26.8867924528302, Blast_Score=67, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115532690, Length=451, Percent_Identity=28.8248337028825, Blast_Score=188, Evalue=7e-48, Organism=Caenorhabditis elegans, GI115532692, Length=451, Percent_Identity=28.8248337028825, Blast_Score=188, Evalue=8e-48, Organism=Caenorhabditis elegans, GI25147174, Length=231, Percent_Identity=25.974025974026, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI17647755, Length=452, Percent_Identity=28.9823008849558, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI24585827, Length=452, Percent_Identity=28.9823008849558, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI24585829, Length=452, Percent_Identity=28.9823008849558, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI24647123, Length=222, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364285, Length=172, Percent_Identity=32.5581395348837, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581187, Length=172, Percent_Identity=32.5581395348837, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI161076610, Length=222, Percent_Identity=29.2792792792793, Blast_Score=66, Evalue=7e-11, Organism=Drosophila melanogaster, GI19920486, Length=222, Percent_Identity=29.2792792792793, Blast_Score=66, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77141; Mature: 77141
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAPPDHDSRTNGDVPMDATAHAPAPLPDFDASAMLQAAFAHHQAGRTGEAAECYKQILQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH HDGMHPDAMHFLGVLACDVGNLPAGIDLIEKSIQLHPNAIYLNNLGNMRGRARDLQGAIA HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH AYRAALSLAPDYAQAHSNLGHTLREAGDPAAAIDSCTVATRLKPDLPQAWTHLGNALLEL HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC GSDEGALDSYMKALALQPNDANAHNNVGNILEKYGRAAGAAESYRRALALEPHRASLHNN CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH LGNVLRDQGQLDQATACYRQAVALDPGFAQAHSNLLLLLNSRLDVALREQFDEARAFGEH HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCC QSAKAQPFQHSANANDAGRRLRVGFVSGDLNSHPVGFFLESVLGHLDRTRIELVAYATRK CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH REDAVSQRLMPQFSAWHDISRLDDAACARRIRDDGIDILVDLSGHTNHNRLSVFAWKPAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCC VQATWLGYFATTGLAAIDYVIADRHVLPLDEASQFVEAPWHLPDSYLCFTPPPFDIEVGP CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEECCC LPASANGAITFGCFNHLVKLNEAVVALWARVLDAMPGSRLLLKTRQLDDPAVQHATLARF CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCCHHHHHHHHHHH AAHGIDGARLMLEGQSPRAELLAAYNRVDIALDPFPYAGGTTSIEALWMGVPVLTRRGER HHCCCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHH FLSHVGESIVDTVGLPDWIASDDADYIAKAVRVGVQRDELATLRRTLRQRLLASPLCDAP HHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCH RFARHLEDAFHGMWARRVACHQANDGHPAQPHRHSSGDARHAAERNFA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure MQAPPDHDSRTNGDVPMDATAHAPAPLPDFDASAMLQAAFAHHQAGRTGEAAECYKQILQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH HDGMHPDAMHFLGVLACDVGNLPAGIDLIEKSIQLHPNAIYLNNLGNMRGRARDLQGAIA HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH AYRAALSLAPDYAQAHSNLGHTLREAGDPAAAIDSCTVATRLKPDLPQAWTHLGNALLEL HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC GSDEGALDSYMKALALQPNDANAHNNVGNILEKYGRAAGAAESYRRALALEPHRASLHNN CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH LGNVLRDQGQLDQATACYRQAVALDPGFAQAHSNLLLLLNSRLDVALREQFDEARAFGEH HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCC QSAKAQPFQHSANANDAGRRLRVGFVSGDLNSHPVGFFLESVLGHLDRTRIELVAYATRK CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH REDAVSQRLMPQFSAWHDISRLDDAACARRIRDDGIDILVDLSGHTNHNRLSVFAWKPAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCC VQATWLGYFATTGLAAIDYVIADRHVLPLDEASQFVEAPWHLPDSYLCFTPPPFDIEVGP CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEECCC LPASANGAITFGCFNHLVKLNEAVVALWARVLDAMPGSRLLLKTRQLDDPAVQHATLARF CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCCHHHHHHHHHHH AAHGIDGARLMLEGQSPRAELLAAYNRVDIALDPFPYAGGTTSIEALWMGVPVLTRRGER HHCCCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHH FLSHVGESIVDTVGLPDWIASDDADYIAKAVRVGVQRDELATLRRTLRQRLLASPLCDAP HHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCH RFARHLEDAFHGMWARRVACHQANDGHPAQPHRHSSGDARHAAERNFA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA