| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is paaE [H]
Identifier: 186477609
GI number: 186477609
Start: 3212328
End: 3213416
Strand: Direct
Name: paaE [H]
Synonym: Bphy_2861
Alternate gene names: 186477609
Gene position: 3212328-3213416 (Clockwise)
Preceding gene: 186477608
Following gene: 186477610
Centisome position: 92.33
GC content: 61.98
Gene sequence:
>1089_bases ATGGCCACCCCGCAATTTCATCCGCTGCGCATCCGGGAAGTGCGGCCGGAAACCGCCGATGCGGTCTCCGTCGCCTTCGA AGTCCCCGTCGAACTGCGCGAGCAGTTTCGCTTCACGCAAGGCCAGTTCGTCACGCTGAAGACGCACATCGACGGTGAGG AAACGCGCCGCTCGTATTCGATCTGCGTTGGCGTCACCGATTACGACCGTGACGGCGAACTCCGCATCGGCATCAAGCGC GTGCGCGGCGGCCGCTTCTCGAACTTCGCGTTCGATACGCTGCAACCCGGCCACACCATCGATGTAATGACGCCCGACGG TCGTTTCTTCACGCACCTGAACGCCGACAACGGCAAGCAGTACGTCGCATTCGCGGGCGGCTCGGGCATCACGCCCGTGC TGGCAATCGTGAAGACGACGCTCGAAATCGAGCCCCGCAGCACATTCACACTGATTTACGGCAATCGCAGCGTCGATCAG ATCATGTTCGCCGAGGAACTCGAAGACCTGAAGAACCGGTTCATGAACCGTTTCGTGCTGTATCACGTGCTGTCCGACGA TCTCCAGGACGTCGAACTGTTCAATGGCGTGCTCGATCAGGCGAAGTGCGCGTCGTTCCTTGAGACGCTGATCCCTGCCG AGGCGATCGACGAAGCGTTCATTTGCGGCCCGGCGCCGATGATGGATGCCGCCGAAGCCGCATTGAAGGCCGCGGGCGTC CCGCAGGAGAAAGTGCACGTCGAGCGTTTCGGCACACCGCTGCCGCAAGCGGGCGTGCCCGCCGCGGAAATCACCGACGA CACGCCGACCGCCGACCTCGAAATCGTGCTTGACGGCAAGAAGCGCAAGCTGCGCTTGCCGTACCAGGGCTTGAGCGTGC TCGACGTCGGTCTGCGTGCGGGCCTCGCGCTGCCGTATGCGTGCAAGGGCGGCGTCTGCTGCACGTGCCGCGCAAAGGTG CTGGAAGGCGAAGTGACGATGGAAAAGAACTACACGCTGGAAGAACATGAGATCAAGGATGGCTTCGTGCTGACCTGCCA GTGTCATCCGATCAGCGACAAGGTCGTCGTCAGCTACGACGAACGTTGA
Upstream 100 bases:
>100_bases CACACCGAACGCCTCGCGCAATTCGGCTCGACGGCATGCAAAGCGCTGTATCGCTGTATCGACTGCCGTGAACCCTTCGA CTACTTCAAACCGTACTGAT
Downstream 100 bases:
>100_bases CACCCGCGCGGCGCACACGCGATGCGCCGCACGCCATGCACGGTATCTGCGCGTCGTCGCTTTCGACATACACGCGATCC GCTTACACTAGGGGCCGCTC
Product: phenylacetate-CoA oxygenase/reductase subunit PaaK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MATPQFHPLRIREVRPETADAVSVAFEVPVELREQFRFTQGQFVTLKTHIDGEETRRSYSICVGVTDYDRDGELRIGIKR VRGGRFSNFAFDTLQPGHTIDVMTPDGRFFTHLNADNGKQYVAFAGGSGITPVLAIVKTTLEIEPRSTFTLIYGNRSVDQ IMFAEELEDLKNRFMNRFVLYHVLSDDLQDVELFNGVLDQAKCASFLETLIPAEAIDEAFICGPAPMMDAAEAALKAAGV PQEKVHVERFGTPLPQAGVPAAEITDDTPTADLEIVLDGKKRKLRLPYQGLSVLDVGLRAGLALPYACKGGVCCTCRAKV LEGEVTMEKNYTLEEHEIKDGFVLTCQCHPISDKVVVSYDER
Sequences:
>Translated_362_residues MATPQFHPLRIREVRPETADAVSVAFEVPVELREQFRFTQGQFVTLKTHIDGEETRRSYSICVGVTDYDRDGELRIGIKR VRGGRFSNFAFDTLQPGHTIDVMTPDGRFFTHLNADNGKQYVAFAGGSGITPVLAIVKTTLEIEPRSTFTLIYGNRSVDQ IMFAEELEDLKNRFMNRFVLYHVLSDDLQDVELFNGVLDQAKCASFLETLIPAEAIDEAFICGPAPMMDAAEAALKAAGV PQEKVHVERFGTPLPQAGVPAAEITDDTPTADLEIVLDGKKRKLRLPYQGLSVLDVGLRAGLALPYACKGGVCCTCRAKV LEGEVTMEKNYTLEEHEIKDGFVLTCQCHPISDKVVVSYDER >Mature_361_residues ATPQFHPLRIREVRPETADAVSVAFEVPVELREQFRFTQGQFVTLKTHIDGEETRRSYSICVGVTDYDRDGELRIGIKRV RGGRFSNFAFDTLQPGHTIDVMTPDGRFFTHLNADNGKQYVAFAGGSGITPVLAIVKTTLEIEPRSTFTLIYGNRSVDQI MFAEELEDLKNRFMNRFVLYHVLSDDLQDVELFNGVLDQAKCASFLETLIPAEAIDEAFICGPAPMMDAAEAALKAAGVP QEKVHVERFGTPLPQAGVPAAEITDDTPTADLEIVLDGKKRKLRLPYQGLSVLDVGLRAGLALPYACKGGVCCTCRAKVL EGEVTMEKNYTLEEHEIKDGFVLTCQCHPISDKVVVSYDER
Specific function: May be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation [H]
COG id: COG1018
COG function: function code C; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Homo sapiens, GI49574502, Length=216, Percent_Identity=28.2407407407407, Blast_Score=73, Evalue=5e-13, Organism=Escherichia coli, GI1787658, Length=357, Percent_Identity=45.0980392156863, Blast_Score=315, Evalue=3e-87, Organism=Escherichia coli, GI1787098, Length=356, Percent_Identity=24.438202247191, Blast_Score=109, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR017927 - InterPro: IPR001041 - InterPro: IPR001709 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR011884 - InterPro: IPR001221 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 40138; Mature: 40007
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPQFHPLRIREVRPETADAVSVAFEVPVELREQFRFTQGQFVTLKTHIDGEETRRSYS CCCCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHCCCCCEEEEEEEECCCHHHCCEEE ICVGVTDYDRDGELRIGIKRVRGGRFSNFAFDTLQPGHTIDVMTPDGRFFTHLNADNGKQ EEEEEECCCCCCCEEEEEEEECCCCCCCEEECCCCCCCEEEEECCCCCEEEEEECCCCCE YVAFAGGSGITPVLAIVKTTLEIEPRSTFTLIYGNRSVDQIMFAEELEDLKNRFMNRFVL EEEEECCCCCHHHHHHHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH YHVLSDDLQDVELFNGVLDQAKCASFLETLIPAEAIDEAFICGPAPMMDAAEAALKAAGV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCHHHHHHHHHHHCCC PQEKVHVERFGTPLPQAGVPAAEITDDTPTADLEIVLDGKKRKLRLPYQGLSVLDVGLRA CHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHC GLALPYACKGGVCCTCRAKVLEGEVTMEKNYTLEEHEIKDGFVLTCQCHPISDKVVVSYD CCCCCCCCCCCEEEEEEEEEECCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEEEEC ER CC >Mature Secondary Structure ATPQFHPLRIREVRPETADAVSVAFEVPVELREQFRFTQGQFVTLKTHIDGEETRRSYS CCCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHCCCCCEEEEEEEECCCHHHCCEEE ICVGVTDYDRDGELRIGIKRVRGGRFSNFAFDTLQPGHTIDVMTPDGRFFTHLNADNGKQ EEEEEECCCCCCCEEEEEEEECCCCCCCEEECCCCCCCEEEEECCCCCEEEEEECCCCCE YVAFAGGSGITPVLAIVKTTLEIEPRSTFTLIYGNRSVDQIMFAEELEDLKNRFMNRFVL EEEEECCCCCHHHHHHHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH YHVLSDDLQDVELFNGVLDQAKCASFLETLIPAEAIDEAFICGPAPMMDAAEAALKAAGV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCHHHHHHHHHHHCCC PQEKVHVERFGTPLPQAGVPAAEITDDTPTADLEIVLDGKKRKLRLPYQGLSVLDVGLRA CHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHC GLALPYACKGGVCCTCRAKVLEGEVTMEKNYTLEEHEIKDGFVLTCQCHPISDKVVVSYD CCCCCCCCCCCEEEEEEEEEECCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEEEEC ER CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FAD [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9748275; 9097039; 9278503; 10766858 [H]