Click here to switch to the map view.

The map label for this gene is pal [H]

Identifier: 186477205

GI number: 186477205

Start: 2755171

End: 2755680

Strand: Direct

Name: pal [H]

Synonym: Bphy_2456

Alternate gene names: 186477205

Gene position: 2755171-2755680 (Clockwise)

Preceding gene: 186477204

Following gene: 186477206

Centisome position: 79.19

GC content: 60.98

Gene sequence:

>510_bases
ATGATGTCCAAACTTCGTATCGCGTTGGCCGTGGCAATGGTCGGCACGCTGGCTGCCTGTCATTCGGGCGTAAAGCTCGA
CGAGAACGCCGGCAAGGGTGGCGCGACGGGCGCACAACCCAACCCGAACGATGTCGCCACGGTAAACGTCGATCCGTTGA
ACGATCCGAACAGCCCGCTGGCAAAGCGCAGCATCTATTTCGACTTCGACAGCTACTCGGTCAAGGACGACTACCAGCCG
CTGCTGCAGCAACACGCTCAGTACCTGAAGAGCCACCCGCAGCGTCACGTCCTTATCCAGGGCAATACCGACGAGCGCGG
CACGAGCGAATACAATCTGGCACTCGGCCAGAAGCGTGCTGAAGCTGTCCGCCGTTCGCTGTCGCTGCTGGGCGTGCCGG
ATTCGGAAATGGAAGCCGTGAGCCTGGGCAAAGAAAAGCCGCAGGCGACGGGTCATGACGAAGCGTCGTGGGCGCAAAAC
CGCCGCGCGGACCTCGTCTATCAACAGTAA

Upstream 100 bases:

>100_bases
ACCGACGGTCGGACGCGGCAGGTCCTGTCCGTTCAGGGGGGCAGCGTACGCGAGCCGTCCTGGGGCCCGTTTATGCAATA
ACACACAAGGAGAGTAAAGC

Downstream 100 bases:

>100_bases
TAGGTGACAAGCCGTATGACGCACCGTTTTTCCTGGCTGCGCATGGCCGCAGCCGCCTGCGTCGCGGGGTCGGCCGTGAT
GGCCCTGCCCGCTCACGCCG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MMSKLRIALAVAMVGTLAACHSGVKLDENAGKGGATGAQPNPNDVATVNVDPLNDPNSPLAKRSIYFDFDSYSVKDDYQP
LLQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRSLSLLGVPDSEMEAVSLGKEKPQATGHDEASWAQN
RRADLVYQQ

Sequences:

>Translated_169_residues
MMSKLRIALAVAMVGTLAACHSGVKLDENAGKGGATGAQPNPNDVATVNVDPLNDPNSPLAKRSIYFDFDSYSVKDDYQP
LLQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRSLSLLGVPDSEMEAVSLGKEKPQATGHDEASWAQN
RRADLVYQQ
>Mature_169_residues
MMSKLRIALAVAMVGTLAACHSGVKLDENAGKGGATGAQPNPNDVATVNVDPLNDPNSPLAKRSIYFDFDSYSVKDDYQP
LLQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRAEAVRRSLSLLGVPDSEMEAVSLGKEKPQATGHDEASWAQN
RRADLVYQQ

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=103, Percent_Identity=48.5436893203884, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18430; Mature: 18430

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSKLRIALAVAMVGTLAACHSGVKLDENAGKGGATGAQPNPNDVATVNVDPLNDPNSPL
CCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
AKRSIYFDFDSYSVKDDYQPLLQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRA
HHCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
EAVRRSLSLLGVPDSEMEAVSLGKEKPQATGHDEASWAQNRRADLVYQQ
HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MMSKLRIALAVAMVGTLAACHSGVKLDENAGKGGATGAQPNPNDVATVNVDPLNDPNSPL
CCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
AKRSIYFDFDSYSVKDDYQPLLQQHAQYLKSHPQRHVLIQGNTDERGTSEYNLALGQKRA
HHCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
EAVRRSLSLLGVPDSEMEAVSLGKEKPQATGHDEASWAQNRRADLVYQQ
HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]