| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186477192
Identifier: 186477192
GI number: 186477192
Start: 2744824
End: 2745243
Strand: Reverse
Name: 186477192
Synonym: Bphy_2443
Alternate gene names: NA
Gene position: 2745243-2744824 (Counterclockwise)
Preceding gene: 186477193
Following gene: 186477188
Centisome position: 78.9
GC content: 65.95
Gene sequence:
>420_bases ATGAAGCCGAACACGCACGCATTCTCCCTGCTGGAACTGGTTGTCGCACTGGCGATCGCAGCGACGCTCGCTGCTTTCGC AATACCGTCGTATCGCGACCATATCGCGAAGGCTCACCGAACCGATGCGGCGTCCGCGCTGTTTCGCGCGGCGCAGTTCG CCGAGTCCGCCGTGCGTGCAGACGGTGCACCGTTGCCGGCCGGTCTGGATCAGGCGCCGCAAGGGGGCAAGGCGATCTAC CGGCTGCGCATCCTGCCCGCCGACGACACGAACGGTGGCTACGCGCTCGAAGCGCAGCCGCTCGAAACCGGTCCGATGGC CGGCGACGCGTGCGGCACGTTCATACTTGATGCAACAGGGCTAAGAAACAATCGGGGTGCAGCGGGCGCCAACCCCGACG ATTGCTGGAGTGCGCGCTAG
Upstream 100 bases:
>100_bases GGCTGCAATTGCAGCTGGTGATAGATGGCGGCGCAGTTGAAAGGCATTGGCGCCGGATTGCCGCGCGCCCCTTCTGAACG CTGGTCTGATGAGGGTCGAC
Downstream 100 bases:
>100_bases ATGGAAAACGCATCGACGACGCGCGCCATGTCAGGGCGGGTTCATATCGGCGTCCTCCGACGCGGCGGAGGACGCCGCCT TGCGCGATTCCCGCTTCACC
Product: hypothetical protein
Products: NA
Alternate protein names: Type IV Pilus Biogenesis Protein; Fimbrial Protein
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MKPNTHAFSLLELVVALAIAATLAAFAIPSYRDHIAKAHRTDAASALFRAAQFAESAVRADGAPLPAGLDQAPQGGKAIY RLRILPADDTNGGYALEAQPLETGPMAGDACGTFILDATGLRNNRGAAGANPDDCWSAR
Sequences:
>Translated_139_residues MKPNTHAFSLLELVVALAIAATLAAFAIPSYRDHIAKAHRTDAASALFRAAQFAESAVRADGAPLPAGLDQAPQGGKAIY RLRILPADDTNGGYALEAQPLETGPMAGDACGTFILDATGLRNNRGAAGANPDDCWSAR >Mature_139_residues MKPNTHAFSLLELVVALAIAATLAAFAIPSYRDHIAKAHRTDAASALFRAAQFAESAVRADGAPLPAGLDQAPQGGKAIY RLRILPADDTNGGYALEAQPLETGPMAGDACGTFILDATGLRNNRGAAGANPDDCWSAR
Specific function: Unknown
COG id: COG4968
COG function: function code NU; Tfp pilus assembly protein PilE
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14387; Mature: 14387
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPNTHAFSLLELVVALAIAATLAAFAIPSYRDHIAKAHRTDAASALFRAAQFAESAVRA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC DGAPLPAGLDQAPQGGKAIYRLRILPADDTNGGYALEAQPLETGPMAGDACGTFILDATG CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCHHHHHEEECCC LRNNRGAAGANPDDCWSAR CCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKPNTHAFSLLELVVALAIAATLAAFAIPSYRDHIAKAHRTDAASALFRAAQFAESAVRA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC DGAPLPAGLDQAPQGGKAIYRLRILPADDTNGGYALEAQPLETGPMAGDACGTFILDATG CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCHHHHHEEECCC LRNNRGAAGANPDDCWSAR CCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA