| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is galE [H]
Identifier: 186477042
GI number: 186477042
Start: 2570446
End: 2571402
Strand: Reverse
Name: galE [H]
Synonym: Bphy_2291
Alternate gene names: 186477042
Gene position: 2571402-2570446 (Counterclockwise)
Preceding gene: 186477043
Following gene: 186477041
Centisome position: 73.91
GC content: 67.61
Gene sequence:
>957_bases ATGAGTCATGTGGTCGTGAGCGGGGCGAATGGGTTCGTCGGACGCGCGCTGTGCTGCGCGCTGCTCGACGCCGGTCATCG CGTGACGGGACTCGTGCGGCGTTCGGGCGCATGCGTAAACGGCGTGGCGGAGTGGGTCGACGAGAGCACGGACTACAGCG GCATTGGGCAGTCTTGGCCTGCCGGCCTGACTGCCGACTGCATCGTGCATTTGGCTGCACGCGTGCATGTGATGCACGAC ACCGCAGCCGACCCTGACGCCGCGTTCCGTGCCACCAATGTCGACGGCACGCTGCGGCTCGCCGCGGCCGCACGGGAGCA CGGCGTGCCGCGTTTCGTGTTCGTCAGCAGCATCAAGGCGGTCGCAGAAAGCGACAACGGCAAGCCCTTGCGCGAAAACG ATCCGCCGCGTATTGAAGATCCGTATGGCCGCTCGAAGCGCGCCGCCGAAGAAGGCCTCCTGCGACTCGGCGAAGCAACG GGCCTCGAGATAGTCATCGTCCGTCCGCCGCTCGTCTACGGGCCGCAAGTGCGCGCTAACTTCCTGCGTCTGATGGATGC AGTCTGGCGTGGCGTGCCGCTGCCGCTCAGCGGCGCTGACGCGCGGCGCAGCATGGTGTACGTGGGCAACCTGGCGGACG CGCTGATGTGTTGCGCGACCGATCCGCGCGCGGCGCACCAGTGCTTTCACGTCGCGGACAGTACCGCGCCGACCGTCGCG GAACTGGTGCGCGCGCTCGGGCGGCATCTAGGCAAGCCTGCGCGTCTGCTGCCGGTACCGGCTGGCTGGCTGCGCGCGGC GGGGCGATTGACGGGCCGTTCCGCGCAAGTTGACCGTCTGATCGGCGGTCTGCAGCTCGATACGTCGCACATACGCGACG TCCTCGGCTGGCAACCGCCGTTCTCAACCGACGAAGGTCTGGCAGCAACCGCCGACTGGTATCGTTCGACTCACTGA
Upstream 100 bases:
>100_bases TGCATCACGGCGGCGGCGCGGCGCGCAAAGGCTCGGCGCATATCCGGATGTTCGTGGCGTCGGCGTTCCGGTTCTTCAAC CGTTTCGGCTGGAAGTGGCT
Downstream 100 bases:
>100_bases ACCGTTCATGCAGATGCAAGATTCACTGATGTCTCCGTGGACTCTATCCCTCGTCGCGGGCGTGGCCGTCTGTGCCTGCG CGGCGATCCTGTACCTGCTG
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MSHVVVSGANGFVGRALCCALLDAGHRVTGLVRRSGACVNGVAEWVDESTDYSGIGQSWPAGLTADCIVHLAARVHVMHD TAADPDAAFRATNVDGTLRLAAAAREHGVPRFVFVSSIKAVAESDNGKPLRENDPPRIEDPYGRSKRAAEEGLLRLGEAT GLEIVIVRPPLVYGPQVRANFLRLMDAVWRGVPLPLSGADARRSMVYVGNLADALMCCATDPRAAHQCFHVADSTAPTVA ELVRALGRHLGKPARLLPVPAGWLRAAGRLTGRSAQVDRLIGGLQLDTSHIRDVLGWQPPFSTDEGLAATADWYRSTH
Sequences:
>Translated_318_residues MSHVVVSGANGFVGRALCCALLDAGHRVTGLVRRSGACVNGVAEWVDESTDYSGIGQSWPAGLTADCIVHLAARVHVMHD TAADPDAAFRATNVDGTLRLAAAAREHGVPRFVFVSSIKAVAESDNGKPLRENDPPRIEDPYGRSKRAAEEGLLRLGEAT GLEIVIVRPPLVYGPQVRANFLRLMDAVWRGVPLPLSGADARRSMVYVGNLADALMCCATDPRAAHQCFHVADSTAPTVA ELVRALGRHLGKPARLLPVPAGWLRAAGRLTGRSAQVDRLIGGLQLDTSHIRDVLGWQPPFSTDEGLAATADWYRSTH >Mature_317_residues SHVVVSGANGFVGRALCCALLDAGHRVTGLVRRSGACVNGVAEWVDESTDYSGIGQSWPAGLTADCIVHLAARVHVMHDT AADPDAAFRATNVDGTLRLAAAAREHGVPRFVFVSSIKAVAESDNGKPLRENDPPRIEDPYGRSKRAAEEGLLRLGEATG LEIVIVRPPLVYGPQVRANFLRLMDAVWRGVPLPLSGADARRSMVYVGNLADALMCCATDPRAAHQCFHVADSTAPTVAE LVRALGRHLGKPARLLPVPAGWLRAAGRLTGRSAQVDRLIGGLQLDTSHIRDVLGWQPPFSTDEGLAATADWYRSTH
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081792, Length=247, Percent_Identity=28.3400809716599, Blast_Score=77, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR016040 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: =5.1.3.2 [H]
Molecular weight: Translated: 33952; Mature: 33821
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHVVVSGANGFVGRALCCALLDAGHRVTGLVRRSGACVNGVAEWVDESTDYSGIGQSWP CCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC AGLTADCIVHLAARVHVMHDTAADPDAAFRATNVDGTLRLAAAAREHGVPRFVFVSSIKA CCCHHHHHHHHHHHHHEEECCCCCCCHHEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHH VAESDNGKPLRENDPPRIEDPYGRSKRAAEEGLLRLGEATGLEIVIVRPPLVYGPQVRAN HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH FLRLMDAVWRGVPLPLSGADARRSMVYVGNLADALMCCATDPRAAHQCFHVADSTAPTVA HHHHHHHHHCCCCCCCCCCCHHCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHH ELVRALGRHLGKPARLLPVPAGWLRAAGRLTGRSAQVDRLIGGLQLDTSHIRDVLGWQPP HHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCC FSTDEGLAATADWYRSTH CCCCCCCCHHHHHHHCCC >Mature Secondary Structure SHVVVSGANGFVGRALCCALLDAGHRVTGLVRRSGACVNGVAEWVDESTDYSGIGQSWP CEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC AGLTADCIVHLAARVHVMHDTAADPDAAFRATNVDGTLRLAAAAREHGVPRFVFVSSIKA CCCHHHHHHHHHHHHHEEECCCCCCCHHEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHH VAESDNGKPLRENDPPRIEDPYGRSKRAAEEGLLRLGEATGLEIVIVRPPLVYGPQVRAN HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH FLRLMDAVWRGVPLPLSGADARRSMVYVGNLADALMCCATDPRAAHQCFHVADSTAPTVA HHHHHHHHHCCCCCCCCCCCHHCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHH ELVRALGRHLGKPARLLPVPAGWLRAAGRLTGRSAQVDRLIGGLQLDTSHIRDVLGWQPP HHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCC FSTDEGLAATADWYRSTH CCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8820651; 10521656 [H]