| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is fliY [H]
Identifier: 186477008
GI number: 186477008
Start: 2531192
End: 2531992
Strand: Direct
Name: fliY [H]
Synonym: Bphy_2257
Alternate gene names: 186477008
Gene position: 2531192-2531992 (Clockwise)
Preceding gene: 186477007
Following gene: 186477009
Centisome position: 72.75
GC content: 64.67
Gene sequence:
>801_bases ATGACCTGCACAACCGCCCATCGCCCGCGCCGCGCGTGGCTCGCCACGCTGCTGCTCGCACCACTCCTGCTCGCTGCGCC GCTCGCGCACGCCGACGCGCTCGACAACATCACGAAGTCGGGCGTCCTCAAGGTCGCCGTGCCCGAAGACTATCCGCCGT TCGGCTCCGTCGGCCCGGACCTGAAGCCGCAGGGCTACGACATCGACACGGCCGCGCTGCTCGCGAAGTCGATGAACGTG AAGCTCGAACTGGTGCCCGTCAACAGCGCGAACCGGATTCCGTATCTGCAAACCAACAAGGTCGATCTCGTGATCTCGTC GCTCGGCAAGACAGCAGAGCGCGAGAAGGTGATCGACTTTTCGTCCGCCTATGCGCCCTACTACCAAGGCGTGTTCGGCC CTGCAGACCTGAAGGTCAGCAGCCCCGCCGACCTGACAGGCAAGACGGTCGGCGCAACGCGCGGCGCGCTCGAAGAAATC GCGCTCACGCAGATGGCGCCCAACGCGACGATCAAGCGCTTCGAAGACAACAACGCGACCATCGCCGCGTTCCTGTCGGG CCAGGTGCAGCTGATCGCGGCAGGCAACATCGTCGCCGCTGCGATTCTCGCCAAGAACCCGCCGCGCCGTCCGGAACCGA AGTTCGTGATCAAGAACTCGCCGTGCTTCGTGGGGCTCAACAAGAACGAGCCGCGTCTGCAGCAGAAAGTCGATGCCGCC ATCGCGCAGGCGAAGCGTGACGGCACGCTCAACACGATGTCGAAGAAGTGGTTCGGCACGGGACTGCCTGCCGATCTGTA A
Upstream 100 bases:
>100_bases ATGGCATAGCCCTTGCTGCATATGGCGCCTCGCACACGCACGCCACGGCATGCGCGTCGCGAGATCCGCTAAAAACCACA CGCCGAAGCCCATCGCCGAC
Downstream 100 bases:
>100_bases GCGGTGCGTCGGTTGAAGCTGGTATCGTGAGGCGGCGCGACGAACGACATGCGCCGCCCGTGCATCAATAAAACGACTCA CGCGCCTGCCCTCGCGCGGG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: CBP; Protein fliY; Sulfate starvation-induced protein 7; SSI7 [H]
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MTCTTAHRPRRAWLATLLLAPLLLAAPLAHADALDNITKSGVLKVAVPEDYPPFGSVGPDLKPQGYDIDTAALLAKSMNV KLELVPVNSANRIPYLQTNKVDLVISSLGKTAEREKVIDFSSAYAPYYQGVFGPADLKVSSPADLTGKTVGATRGALEEI ALTQMAPNATIKRFEDNNATIAAFLSGQVQLIAAGNIVAAAILAKNPPRRPEPKFVIKNSPCFVGLNKNEPRLQQKVDAA IAQAKRDGTLNTMSKKWFGTGLPADL
Sequences:
>Translated_266_residues MTCTTAHRPRRAWLATLLLAPLLLAAPLAHADALDNITKSGVLKVAVPEDYPPFGSVGPDLKPQGYDIDTAALLAKSMNV KLELVPVNSANRIPYLQTNKVDLVISSLGKTAEREKVIDFSSAYAPYYQGVFGPADLKVSSPADLTGKTVGATRGALEEI ALTQMAPNATIKRFEDNNATIAAFLSGQVQLIAAGNIVAAAILAKNPPRRPEPKFVIKNSPCFVGLNKNEPRLQQKVDAA IAQAKRDGTLNTMSKKWFGTGLPADL >Mature_265_residues TCTTAHRPRRAWLATLLLAPLLLAAPLAHADALDNITKSGVLKVAVPEDYPPFGSVGPDLKPQGYDIDTAALLAKSMNVK LELVPVNSANRIPYLQTNKVDLVISSLGKTAEREKVIDFSSAYAPYYQGVFGPADLKVSSPADLTGKTVGATRGALEEIA LTQMAPNATIKRFEDNNATIAAFLSGQVQLIAAGNIVAAAILAKNPPRRPEPKFVIKNSPCFVGLNKNEPRLQQKVDAAI AQAKRDGTLNTMSKKWFGTGLPADL
Specific function: Part of a binding-protein-dependent transport system for cystine [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788228, Length=262, Percent_Identity=27.4809160305344, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787088, Length=227, Percent_Identity=25.9911894273128, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1787085, Length=225, Percent_Identity=25.7777777777778, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1787031, Length=223, Percent_Identity=27.8026905829596, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786876, Length=249, Percent_Identity=26.1044176706827, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788649, Length=235, Percent_Identity=24.6808510638298, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788648, Length=227, Percent_Identity=25.5506607929515, Blast_Score=65, Evalue=4e-12,
Paralogues:
None
Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 28384; Mature: 28253
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCTTAHRPRRAWLATLLLAPLLLAAPLAHADALDNITKSGVLKVAVPEDYPPFGSVGPD CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC LKPQGYDIDTAALLAKSMNVKLELVPVNSANRIPYLQTNKVDLVISSLGKTAEREKVIDF CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCHHHHHHHHCCHHHHHHHHCC SSAYAPYYQGVFGPADLKVSSPADLTGKTVGATRGALEEIALTQMAPNATIKRFEDNNAT HHHCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCE IAAFLSGQVQLIAAGNIVAAAILAKNPPRRPEPKFVIKNSPCFVGLNKNEPRLQQKVDAA EEEEECCCEEEEEECCHHHHHHHHCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHHH IAQAKRDGTLNTMSKKWFGTGLPADL HHHHHCCCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure TCTTAHRPRRAWLATLLLAPLLLAAPLAHADALDNITKSGVLKVAVPEDYPPFGSVGPD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC LKPQGYDIDTAALLAKSMNVKLELVPVNSANRIPYLQTNKVDLVISSLGKTAEREKVIDF CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCHHHHHHHHCCHHHHHHHHCC SSAYAPYYQGVFGPADLKVSSPADLTGKTVGATRGALEEIALTQMAPNATIKRFEDNNAT HHHCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCE IAAFLSGQVQLIAAGNIVAAAILAKNPPRRPEPKFVIKNSPCFVGLNKNEPRLQQKVDAA EEEEECCCEEEEEECCHHHHHHHHCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHHH IAQAKRDGTLNTMSKKWFGTGLPADL HHHHHCCCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]