| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476795
Identifier: 186476795
GI number: 186476795
Start: 2291138
End: 2292643
Strand: Reverse
Name: 186476795
Synonym: Bphy_2041
Alternate gene names: NA
Gene position: 2292643-2291138 (Counterclockwise)
Preceding gene: 186476796
Following gene: 186476794
Centisome position: 65.9
GC content: 61.75
Gene sequence:
>1506_bases ATGATTCGATACGTCTGTCCGAACCGGGTGGCATGCATCGCTATCGCAACCACATTTCTCGCAGGCTGTACGACGTTCTC CAAGGACGGAGGATTCAACGCCGTATCCACTACCGCGTCTGAGCGGCTTGGCAAGGATGCCGTCTACATCAAAACCGATG AAGACCGCGACGCCGTTTTCAAGCGCACTCAGGAACTGCTGTCGAAGCCGCTCGGTATGGACGATGCCGTTCAGGTCGCG CTGCTGAACAACCGGGGACTCCAGGCGTCGTACGCCGAACTCGGCATCGCCGAGGCCGACCTCGTGCAGGCGGGCCGTCT GCCCAATCCGGGTTTTACCTTCAGCCGGACCCACTGGAGCGATGGCATCAGCATTAGCCGGACCTTCTCGATGGGTGTGC TGGGCGTGCTCACGCTGCCGGTGGCGACGCGCATCGAGAGTCGCCGGTTTGAGCAAACGAAGCTCGAGGCTGCCAATGCG ATGCTTGGCGTCGCTGCTGACGCTCGAAAAGCCTACGTCAACGCCGTAGCTGCGGCGCAGTCCGCCGTTTACGCCGCCCA GGTCAAGGACTCGGCCGAAGCTGGCGCAGAGCTCGCGTTGCGCATGCGTCAGGCCGGCAGTTTCAGCAAGCTCGACTATG CACGCGAGCAGGCTTTTTACGCCGAGTCGGTCGCGCAACTGGCCAAGGCCCGACAGCAGTCGGTCGTAGCCCGGGAGAAG CTCACACGCACGATGGGCTTATGGGGCGCGGGAACCCAGTACACGTTGCCGGACCGTCTGCCTGACGTGCCGAAGGAGAG GCCTCAACTGAATGAGGTCGAGAGCTTTGCGATGCAAAACCGCCTCGATATTCAGGCGGCGAAACTGAGAACACAGGGCG TTGCAACTTCGTTGGGTCTGAGCAGGGCAACCCGGTTCGTCAATGCGCTGGATGTCGGATATCTCGACAACTTCGAGACG GACAAGGGGCACGAGCACGGGTACGAAATCAGCGTTGAGATTCCCATCTTCGATTGGGGCAGCGCGAAAGTTGCACGGGC CGAAGCTATCTACATGCAGTCGGCGAACCGGCTCGCCCAGACGGCGATCGATGCACGTTCCGAAGTTCGCGAGTCGTACG CCGCGTACGTGACGAGCTACGACGTGGCCAGGCACTACCGCGATGAAGTCGTGCCTGTTCGCAAGACGATCTCCGACGAA ATGCTGCTGCGCTACAACGGCATGCTGACAAGCGTATTCGAACTGCTCGCCGATTCGCGCGACCAGGTTGCGGCCGTCAA CGGATATATCGACGCGCTGAAAGACTACTGGCTTGCGGAAACGGACTTGCAACAGTCGCTGGGCGGCCGGCTTCCGCCGC TTGCAATGGCGCAGACGCCCGACGTACCGCGCAGTGCCGAAGCGCCAGCTACTGCCGCACAGCGGGCACCGGCTCCGAGG CAGGACTCGCCGTTGCCCATTCCAGCGACGCGGCCCGCGTCGCCGATGAATTCAGAAGGTAAATGA
Upstream 100 bases:
>100_bases CCGTCGCGCCCGGTCAGGGCAAGACTGGAACGAAGCACGGTCAACAAGCCGAGTCGCCACAAAAGGGAAAGAACGGGCAC GACCACGGAGGCGATTCGAA
Downstream 100 bases:
>100_bases ACATGGTCTCACGTCGAAATTTTCTCGGCGGCTCAGGGGCGGCGTTGCTCGGCGCGGCGTTGGTCAGCAAAGCTGGAGCG GCTGCACTTCCAGAAGCGCC
Product: outer membrane efflux protein
Products: NA
Alternate protein names: Copper lerance Protein; Copper Resistance-Related Lipoprotein; Outer Membrane Efflux Protein Involved In Copper Resistance; Metal Ion Efflux Outer Membrane Protein; Outer Membrane Protein; Copper Resistance-Related Protein; TypeIsecretion System Outer Membrane Chanel Lipoprotein; Copper Resistance Protein; Outer Membrane Protein-Like Protein; Efflux Protein; Outer Membrane Efflux Protein Involved
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MIRYVCPNRVACIAIATTFLAGCTTFSKDGGFNAVSTTASERLGKDAVYIKTDEDRDAVFKRTQELLSKPLGMDDAVQVA LLNNRGLQASYAELGIAEADLVQAGRLPNPGFTFSRTHWSDGISISRTFSMGVLGVLTLPVATRIESRRFEQTKLEAANA MLGVAADARKAYVNAVAAAQSAVYAAQVKDSAEAGAELALRMRQAGSFSKLDYAREQAFYAESVAQLAKARQQSVVAREK LTRTMGLWGAGTQYTLPDRLPDVPKERPQLNEVESFAMQNRLDIQAAKLRTQGVATSLGLSRATRFVNALDVGYLDNFET DKGHEHGYEISVEIPIFDWGSAKVARAEAIYMQSANRLAQTAIDARSEVRESYAAYVTSYDVARHYRDEVVPVRKTISDE MLLRYNGMLTSVFELLADSRDQVAAVNGYIDALKDYWLAETDLQQSLGGRLPPLAMAQTPDVPRSAEAPATAAQRAPAPR QDSPLPIPATRPASPMNSEGK
Sequences:
>Translated_501_residues MIRYVCPNRVACIAIATTFLAGCTTFSKDGGFNAVSTTASERLGKDAVYIKTDEDRDAVFKRTQELLSKPLGMDDAVQVA LLNNRGLQASYAELGIAEADLVQAGRLPNPGFTFSRTHWSDGISISRTFSMGVLGVLTLPVATRIESRRFEQTKLEAANA MLGVAADARKAYVNAVAAAQSAVYAAQVKDSAEAGAELALRMRQAGSFSKLDYAREQAFYAESVAQLAKARQQSVVAREK LTRTMGLWGAGTQYTLPDRLPDVPKERPQLNEVESFAMQNRLDIQAAKLRTQGVATSLGLSRATRFVNALDVGYLDNFET DKGHEHGYEISVEIPIFDWGSAKVARAEAIYMQSANRLAQTAIDARSEVRESYAAYVTSYDVARHYRDEVVPVRKTISDE MLLRYNGMLTSVFELLADSRDQVAAVNGYIDALKDYWLAETDLQQSLGGRLPPLAMAQTPDVPRSAEAPATAAQRAPAPR QDSPLPIPATRPASPMNSEGK >Mature_501_residues MIRYVCPNRVACIAIATTFLAGCTTFSKDGGFNAVSTTASERLGKDAVYIKTDEDRDAVFKRTQELLSKPLGMDDAVQVA LLNNRGLQASYAELGIAEADLVQAGRLPNPGFTFSRTHWSDGISISRTFSMGVLGVLTLPVATRIESRRFEQTKLEAANA MLGVAADARKAYVNAVAAAQSAVYAAQVKDSAEAGAELALRMRQAGSFSKLDYAREQAFYAESVAQLAKARQQSVVAREK LTRTMGLWGAGTQYTLPDRLPDVPKERPQLNEVESFAMQNRLDIQAAKLRTQGVATSLGLSRATRFVNALDVGYLDNFET DKGHEHGYEISVEIPIFDWGSAKVARAEAIYMQSANRLAQTAIDARSEVRESYAAYVTSYDVARHYRDEVVPVRKTISDE MLLRYNGMLTSVFELLADSRDQVAAVNGYIDALKDYWLAETDLQQSLGGRLPPLAMAQTPDVPRSAEAPATAAQRAPAPR QDSPLPIPATRPASPMNSEGK
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54606; Mature: 54606
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRYVCPNRVACIAIATTFLAGCTTFSKDGGFNAVSTTASERLGKDAVYIKTDEDRDAVF CCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHH KRTQELLSKPLGMDDAVQVALLNNRGLQASYAELGIAEADLVQAGRLPNPGFTFSRTHWS HHHHHHHHCCCCCCHHEEEEEECCCCCCCHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC DGISISRTFSMGVLGVLTLPVATRIESRRFEQTKLEAANAMLGVAADARKAYVNAVAAAQ CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAVYAAQVKDSAEAGAELALRMRQAGSFSKLDYAREQAFYAESVAQLAKARQQSVVAREK HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTRTMGLWGAGTQYTLPDRLPDVPKERPQLNEVESFAMQNRLDIQAAKLRTQGVATSLGL HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH SRATRFVNALDVGYLDNFETDKGHEHGYEISVEIPIFDWGSAKVARAEAIYMQSANRLAQ HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH TAIDARSEVRESYAAYVTSYDVARHYRDEVVPVRKTISDEMLLRYNGMLTSVFELLADSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC DQVAAVNGYIDALKDYWLAETDLQQSLGGRLPPLAMAQTPDVPRSAEAPATAAQRAPAPR CCEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC QDSPLPIPATRPASPMNSEGK CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIRYVCPNRVACIAIATTFLAGCTTFSKDGGFNAVSTTASERLGKDAVYIKTDEDRDAVF CCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHH KRTQELLSKPLGMDDAVQVALLNNRGLQASYAELGIAEADLVQAGRLPNPGFTFSRTHWS HHHHHHHHCCCCCCHHEEEEEECCCCCCCHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC DGISISRTFSMGVLGVLTLPVATRIESRRFEQTKLEAANAMLGVAADARKAYVNAVAAAQ CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAVYAAQVKDSAEAGAELALRMRQAGSFSKLDYAREQAFYAESVAQLAKARQQSVVAREK HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTRTMGLWGAGTQYTLPDRLPDVPKERPQLNEVESFAMQNRLDIQAAKLRTQGVATSLGL HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH SRATRFVNALDVGYLDNFETDKGHEHGYEISVEIPIFDWGSAKVARAEAIYMQSANRLAQ HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH TAIDARSEVRESYAAYVTSYDVARHYRDEVVPVRKTISDEMLLRYNGMLTSVFELLADSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC DQVAAVNGYIDALKDYWLAETDLQQSLGGRLPPLAMAQTPDVPRSAEAPATAAQRAPAPR CCEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC QDSPLPIPATRPASPMNSEGK CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA