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The map label for this gene is ltrA [H]

Identifier: 186476703

GI number: 186476703

Start: 2192536

End: 2193513

Strand: Reverse

Name: ltrA [H]

Synonym: Bphy_1948

Alternate gene names: 186476703

Gene position: 2193513-2192536 (Counterclockwise)

Preceding gene: 186476708

Following gene: 186476693

Centisome position: 63.05

GC content: 65.75

Gene sequence:

>978_bases
ATGAAGATCGATTCGCATAACCTGAACGACCTGATGTACTTTTCGCAGGTCGTCGAACACGGCGGGTTTTCCGCCGCCGA
ACGCGTGCTCGGCATTTCGAAGTCGCGCCTGTCGCGCCGGCTGACGGAGCTCGAGGCGTCGCTGGGCGTGCGTCTGTTGC
AGCGCTCGACGCGCAAGCTCGCGTTGACGGAAGCAGGGCAGCTCTTTTACCAGCACTGTCAGGCGATGCTGTCCGAAGCG
CAGGCGGCCGTCAATGTCGTGCAGCAGCTGCGCGCGTCGCCGCGCGGCACGGTGCGCGTCAGCGTGCCCGTGACCATCTC
GCAGACCATCATGTCGCAGATCCTGCCGGAATTCATGCATCGTTATCCGGAAGTGCGCGTCGTGATGCGCGTGACCAATC
GCGTCGTCGATCTGTTCGAAGATTCGATCGACGTCGCGCTGCGCGTGCGCTCTGAGCCGCCCGAAAACGCGAATATCGTC
GTGCGGCCGCTGTGGCGCACGCAGCAGATGCTGGTCGGTGCGCCGAGCCTCCTGAGCCAGAACGCTCCGCCGCTGGAGCC
CGCCGATCTGAAGCGCTTCGAAACGCTCGATACGCCTACGGGCGACGGCCGCCACGTGTACAACCTGATCGCGCCCGACG
GCACGCGACACGCGCACGAACACGAGCCGCGTCTCGTGACGGCCGACCTGATGATGGTGACGGAAGCCGCACTCGCGGGC
GTCGGCATCGCGGCGCTGCCGGAGATGATGTACGGCGCCGCGCTGCGCAGCGGGCGTCTGTCGCCCGTGATGCCCGGCTG
GACGCTGCCGTCGCCGCAGCTCTATGCCGTGTTCCTGTCGCGTCAGGGCATGGTGCCCGCGGTGCGGACCTTCGTCGACT
ATCTCGTCGAAATGCTCGATCCCGATACCGGCAAGCATATCCAGCAGGAATGTCCGGAGCGCGAAGCGAAGTTGCGGCTG
AAAGCGGCCGTGGCCTGA

Upstream 100 bases:

>100_bases
GAATAGCGTTATTTCTGAAACATAGGGCTATTATATGGACCGCTTTTGGCCGTGACAGGCCGTCTATCGCAATGGATTGT
TCTGCTAGTGAAACGATGAC

Downstream 100 bases:

>100_bases
TGCATCGGGCGTGAGCCGTGCGAGCAGGCAGAGCAGGGCATATCGTTTTTGCCATTTAAGCGCTGCCGGCGATGGATACT
TTCAATGGCCGCAGGCTTGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTEAGQLFYQHCQAMLSEA
QAAVNVVQQLRASPRGTVRVSVPVTISQTIMSQILPEFMHRYPEVRVVMRVTNRVVDLFEDSIDVALRVRSEPPENANIV
VRPLWRTQQMLVGAPSLLSQNAPPLEPADLKRFETLDTPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMMVTEAALAG
VGIAALPEMMYGAALRSGRLSPVMPGWTLPSPQLYAVFLSRQGMVPAVRTFVDYLVEMLDPDTGKHIQQECPEREAKLRL
KAAVA

Sequences:

>Translated_325_residues
MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTEAGQLFYQHCQAMLSEA
QAAVNVVQQLRASPRGTVRVSVPVTISQTIMSQILPEFMHRYPEVRVVMRVTNRVVDLFEDSIDVALRVRSEPPENANIV
VRPLWRTQQMLVGAPSLLSQNAPPLEPADLKRFETLDTPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMMVTEAALAG
VGIAALPEMMYGAALRSGRLSPVMPGWTLPSPQLYAVFLSRQGMVPAVRTFVDYLVEMLDPDTGKHIQQECPEREAKLRL
KAAVA
>Mature_325_residues
MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTEAGQLFYQHCQAMLSEA
QAAVNVVQQLRASPRGTVRVSVPVTISQTIMSQILPEFMHRYPEVRVVMRVTNRVVDLFEDSIDVALRVRSEPPENANIV
VRPLWRTQQMLVGAPSLLSQNAPPLEPADLKRFETLDTPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMMVTEAALAG
VGIAALPEMMYGAALRSGRLSPVMPGWTLPSPQLYAVFLSRQGMVPAVRTFVDYLVEMLDPDTGKHIQQECPEREAKLRL
KAAVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=306, Percent_Identity=30.718954248366, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=28.9036544850498, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789440, Length=297, Percent_Identity=28.2828282828283, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=27.1186440677966, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=26.6666666666667, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=25.3378378378378, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=25.6849315068493, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=31.8840579710145, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.0847457627119, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=24.4186046511628, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=289, Percent_Identity=25.2595155709343, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788748, Length=125, Percent_Identity=33.6, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787879, Length=307, Percent_Identity=27.0358306188925, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788297, Length=272, Percent_Identity=25.7352941176471, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=217, Percent_Identity=22.5806451612903, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788706, Length=151, Percent_Identity=27.1523178807947, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36117; Mature: 36117

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRASPRGTVRVSVPVTISQTIMSQILPEFMH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHH
RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSEPPENANIVVRPLWRTQQMLVGAPSLLSQ
HCCHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEECHHHHHHHHCCHHHHCC
NAPPLEPADLKRFETLDTPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMMVTEAALAG
CCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHH
VGIAALPEMMYGAALRSGRLSPVMPGWTLPSPQLYAVFLSRQGMVPAVRTFVDYLVEMLD
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
PDTGKHIQQECPEREAKLRLKAAVA
CCCCHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRASPRGTVRVSVPVTISQTIMSQILPEFMH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHH
RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSEPPENANIVVRPLWRTQQMLVGAPSLLSQ
HCCHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEECHHHHHHHHCCHHHHCC
NAPPLEPADLKRFETLDTPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMMVTEAALAG
CCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHH
VGIAALPEMMYGAALRSGRLSPVMPGWTLPSPQLYAVFLSRQGMVPAVRTFVDYLVEMLD
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
PDTGKHIQQECPEREAKLRLKAAVA
CCCCHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]