| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476559
Identifier: 186476559
GI number: 186476559
Start: 2058771
End: 2060669
Strand: Reverse
Name: 186476559
Synonym: Bphy_1801
Alternate gene names: NA
Gene position: 2060669-2058771 (Counterclockwise)
Preceding gene: 186476560
Following gene: 186476554
Centisome position: 59.23
GC content: 66.14
Gene sequence:
>1899_bases ATGAGCCGCCGCGTGCACAGGCTGCGCGCGGCCGCCATGCTGCCGCTGCTGGTCTGTGCCTGCGGCGCGCCGACCGTGTG CGCGCAGGAACGCGTCGCGTCCGACGATGTGCCGCCATCGACGATCGAACGGGACGTGCATCTGTTCGTCGTGCAGAAGG ACGGCTCGATCGAGGAGCACGACGACACGATCCTGCGCGCGAACACGACGAGCGGCGTCGACGACATCGCCCAGCGCTAC GTGTGGTTCAACAAGGACATCGAACAGGTGCAGCTGCTCGCGGCGGAGACAATCGATCGCGACGGTGTCGCGCATCCCGT TGGCCCCGATGGCATTCGCGATGTGCAGGAGCCGCGCTCGGCCGGGGCGCCGACCTTCCAGGACGGCGTGCTGCGCACGG TGATTTTTCCTGGAATCGAGCCGGGTGCGCGCGTGCATCTCGCGTTTCGCAAGACACGCTCGGTGCCGCTGCAAGGCGGG ACGTTTGCGTATTTCGTCGAGCCGACGCGCGGGCCTGTCGACATGCAGCAGTTGATCTTCGATCTGCCCGCCGACGTCCC GCTCCATGCCGACGCCCGCGGCTATGTCGCGTTGCCGCCCGTCACGGAGAACGGCCGCACGCGCTATACCTTCGAGTATC GGCATGGGCCGTATGCGCCCATCGAGGCGGGCGCCGTCGGCTACGCGAGCTGGGGCGACCGGCTGATGGTGTCGACGACG CGCGATTTCGCGTCGTTTGCGCAGCGCTATCGCACGGCGGCGCAGGACCCGACGTGGCGCGACCCTGCCGTTGCACAACT CGCGCAAGCGCTGACGGCGCATGCCGGCGACCCGCGTGAGAAGGCGCACATCCTGTACGACTGGGTGCGGCTGAACATCC GCTATGTCGCGCTGTTTCTCGGCGAGACGGCGGCCGTGCCGCACAAGGTCAGCGATATCCTGCGCAACCGTTATGGCGAT TGCAAGGATCACGTCGCGCTGTACGGCGCGATGCTCGCGGCCGTGGGCATCGACAGTCAGGCGGTGCTGCTCAATCTGGG GCCTGTTTATACGCTGCCCGATGTGCCGGGGTACGGCGCGGGCGCGATCAATCACGCGATCACGTGGATTCCTTCGTTGA ATCTTTACGCGGACACGACGGCGGGCGGGGTCGGCTTCGGTTATCTGCCGCCCGGCGCGATGGACCGGCCCGTGCTGCTC GTCGACGACGGTGTGCTTGCGCGTACGCCGGCGACGCAGGAACGCGGCCGCAATGCGCGGCTTGCGATCGATATCGACGG GACGGGGACGGCGGCTTTCACGTATCGCGTCGAAGACGTGGGCTTGCCGGCGGAACTCGAGCGCAACGTGTTTCGGCGCG CGACGCGGCAGCGTTGGCAGCAGATTGCCGCCGACCGTTTGCGGCAGACAGGATTGCATGGCATCGCGCGGATGCAGCCG GGGGAGCTGACGGCGACGTCAGGCCCGTTTGCGATTGCGATGCAGGGGACGTTGGATCACTTTACGTGGCCTGACGGCAC GACGGCATTGCCTGCGTTGACGAGCCTGTCGGGGGGCATTGCGACGCAGGTGCAGGTGTGGCTCGCCGAACGGGAGCGTA CGCAGCCGTGGGTCTGCATCGGTGGAGATTTCGATGAGACGGCATTGATTACGCTGCCCGATACGGTGCGCGTCACCGAT TTGCCCGTCGATACTGAGGTGCGGGATCGGTTTTTCGACTATCAGTCGCATTATGTCTTTGATCCTGCTGCGCGGCTTGT GCAGATCACCCGGCGGCTTCGCGCGGTGTTCGGGCACCAGGTGTGTAGTGCCGATGAGTTCGCTCAGGCGCGAAGTTCTC TTGTGAGGATTGAACGCGATGCGTTGGCGCAAATCGTGGTGCGGGCTGGCGGGCGGTAG
Upstream 100 bases:
>100_bases ACGTATCCAATTTCAATCACGCGTTTCGCGCCGAATTCGCGATGAGTCCGCGCACATGGCGCATGCAGCGCCGCGCACGG CGTTGCGAGGCGCGTGAGAC
Downstream 100 bases:
>100_bases GCTTTCTCGGTTTTTGTTGTCTGCGACGCAGTCGATGTTCTTGCCTGCGGCGCGGCGTTGCCGGTTTTTTCTTCGCGGAT GCCAGCGCAGCACTCAAAAC
Product: putative transmembrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 632; Mature: 631
Protein sequence:
>632_residues MSRRVHRLRAAAMLPLLVCACGAPTVCAQERVASDDVPPSTIERDVHLFVVQKDGSIEEHDDTILRANTTSGVDDIAQRY VWFNKDIEQVQLLAAETIDRDGVAHPVGPDGIRDVQEPRSAGAPTFQDGVLRTVIFPGIEPGARVHLAFRKTRSVPLQGG TFAYFVEPTRGPVDMQQLIFDLPADVPLHADARGYVALPPVTENGRTRYTFEYRHGPYAPIEAGAVGYASWGDRLMVSTT RDFASFAQRYRTAAQDPTWRDPAVAQLAQALTAHAGDPREKAHILYDWVRLNIRYVALFLGETAAVPHKVSDILRNRYGD CKDHVALYGAMLAAVGIDSQAVLLNLGPVYTLPDVPGYGAGAINHAITWIPSLNLYADTTAGGVGFGYLPPGAMDRPVLL VDDGVLARTPATQERGRNARLAIDIDGTGTAAFTYRVEDVGLPAELERNVFRRATRQRWQQIAADRLRQTGLHGIARMQP GELTATSGPFAIAMQGTLDHFTWPDGTTALPALTSLSGGIATQVQVWLAERERTQPWVCIGGDFDETALITLPDTVRVTD LPVDTEVRDRFFDYQSHYVFDPAARLVQITRRLRAVFGHQVCSADEFAQARSSLVRIERDALAQIVVRAGGR
Sequences:
>Translated_632_residues MSRRVHRLRAAAMLPLLVCACGAPTVCAQERVASDDVPPSTIERDVHLFVVQKDGSIEEHDDTILRANTTSGVDDIAQRY VWFNKDIEQVQLLAAETIDRDGVAHPVGPDGIRDVQEPRSAGAPTFQDGVLRTVIFPGIEPGARVHLAFRKTRSVPLQGG TFAYFVEPTRGPVDMQQLIFDLPADVPLHADARGYVALPPVTENGRTRYTFEYRHGPYAPIEAGAVGYASWGDRLMVSTT RDFASFAQRYRTAAQDPTWRDPAVAQLAQALTAHAGDPREKAHILYDWVRLNIRYVALFLGETAAVPHKVSDILRNRYGD CKDHVALYGAMLAAVGIDSQAVLLNLGPVYTLPDVPGYGAGAINHAITWIPSLNLYADTTAGGVGFGYLPPGAMDRPVLL VDDGVLARTPATQERGRNARLAIDIDGTGTAAFTYRVEDVGLPAELERNVFRRATRQRWQQIAADRLRQTGLHGIARMQP GELTATSGPFAIAMQGTLDHFTWPDGTTALPALTSLSGGIATQVQVWLAERERTQPWVCIGGDFDETALITLPDTVRVTD LPVDTEVRDRFFDYQSHYVFDPAARLVQITRRLRAVFGHQVCSADEFAQARSSLVRIERDALAQIVVRAGGR >Mature_631_residues SRRVHRLRAAAMLPLLVCACGAPTVCAQERVASDDVPPSTIERDVHLFVVQKDGSIEEHDDTILRANTTSGVDDIAQRYV WFNKDIEQVQLLAAETIDRDGVAHPVGPDGIRDVQEPRSAGAPTFQDGVLRTVIFPGIEPGARVHLAFRKTRSVPLQGGT FAYFVEPTRGPVDMQQLIFDLPADVPLHADARGYVALPPVTENGRTRYTFEYRHGPYAPIEAGAVGYASWGDRLMVSTTR DFASFAQRYRTAAQDPTWRDPAVAQLAQALTAHAGDPREKAHILYDWVRLNIRYVALFLGETAAVPHKVSDILRNRYGDC KDHVALYGAMLAAVGIDSQAVLLNLGPVYTLPDVPGYGAGAINHAITWIPSLNLYADTTAGGVGFGYLPPGAMDRPVLLV DDGVLARTPATQERGRNARLAIDIDGTGTAAFTYRVEDVGLPAELERNVFRRATRQRWQQIAADRLRQTGLHGIARMQPG ELTATSGPFAIAMQGTLDHFTWPDGTTALPALTSLSGGIATQVQVWLAERERTQPWVCIGGDFDETALITLPDTVRVTDL PVDTEVRDRFFDYQSHYVFDPAARLVQITRRLRAVFGHQVCSADEFAQARSSLVRIERDALAQIVVRAGGR
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69284; Mature: 69153
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRVHRLRAAAMLPLLVCACGAPTVCAQERVASDDVPPSTIERDVHLFVVQKDGSIEEH CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCCCCC DDTILRANTTSGVDDIAQRYVWFNKDIEQVQLLAAETIDRDGVAHPVGPDGIRDVQEPRS CCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH AGAPTFQDGVLRTVIFPGIEPGARVHLAFRKTRSVPLQGGTFAYFVEPTRGPVDMQQLIF CCCCCHHCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHH DLPADVPLHADARGYVALPPVTENGRTRYTFEYRHGPYAPIEAGAVGYASWGDRLMVSTT HCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEECCCCCEEEEEEC RDFASFAQRYRTAAQDPTWRDPAVAQLAQALTAHAGDPREKAHILYDWVRLNIRYVALFL HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHEEEEHHHEEEEEEEEE GETAAVPHKVSDILRNRYGDCKDHVALYGAMLAAVGIDSQAVLLNLGPVYTLPDVPGYGA CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCC GAINHAITWIPSLNLYADTTAGGVGFGYLPPGAMDRPVLLVDDGVLARTPATQERGRNAR CHHHHHEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCHHHCCCCCE LAIDIDGTGTAAFTYRVEDVGLPAELERNVFRRATRQRWQQIAADRLRQTGLHGIARMQP EEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC GELTATSGPFAIAMQGTLDHFTWPDGTTALPALTSLSGGIATQVQVWLAERERTQPWVCI CCEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHHEEEEEHHHCCCCCEEEE GGDFDETALITLPDTVRVTDLPVDTEVRDRFFDYQSHYVFDPAARLVQITRRLRAVFGHQ CCCCCCEEEEECCCCEEEECCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHH VCSADEFAQARSSLVRIERDALAQIVVRAGGR HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SRRVHRLRAAAMLPLLVCACGAPTVCAQERVASDDVPPSTIERDVHLFVVQKDGSIEEH CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCCCCC DDTILRANTTSGVDDIAQRYVWFNKDIEQVQLLAAETIDRDGVAHPVGPDGIRDVQEPRS CCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH AGAPTFQDGVLRTVIFPGIEPGARVHLAFRKTRSVPLQGGTFAYFVEPTRGPVDMQQLIF CCCCCHHCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHH DLPADVPLHADARGYVALPPVTENGRTRYTFEYRHGPYAPIEAGAVGYASWGDRLMVSTT HCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEECCCCCEEEEEEC RDFASFAQRYRTAAQDPTWRDPAVAQLAQALTAHAGDPREKAHILYDWVRLNIRYVALFL HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHEEEEHHHEEEEEEEEE GETAAVPHKVSDILRNRYGDCKDHVALYGAMLAAVGIDSQAVLLNLGPVYTLPDVPGYGA CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCC GAINHAITWIPSLNLYADTTAGGVGFGYLPPGAMDRPVLLVDDGVLARTPATQERGRNAR CHHHHHEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCHHHCCCCCE LAIDIDGTGTAAFTYRVEDVGLPAELERNVFRRATRQRWQQIAADRLRQTGLHGIARMQP EEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC GELTATSGPFAIAMQGTLDHFTWPDGTTALPALTSLSGGIATQVQVWLAERERTQPWVCI CCEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHHEEEEEHHHCCCCCEEEE GGDFDETALITLPDTVRVTDLPVDTEVRDRFFDYQSHYVFDPAARLVQITRRLRAVFGHQ CCCCCCEEEEECCCCEEEECCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHH VCSADEFAQARSSLVRIERDALAQIVVRAGGR HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA