| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is ybiO [H]
Identifier: 186476512
GI number: 186476512
Start: 2003252
End: 2005891
Strand: Reverse
Name: ybiO [H]
Synonym: Bphy_1754
Alternate gene names: 186476512
Gene position: 2005891-2003252 (Counterclockwise)
Preceding gene: 186476513
Following gene: 186476510
Centisome position: 57.65
GC content: 65.64
Gene sequence:
>2640_bases ATGAAGTCATGCCCTGCGCGGCGTGAATCGCGGGCTGCGCCGTCATCCGGCGGGCTGCTGGCGATTGACGCCGGTTTTCG TATTGTTTTCGGATTCTTTTCGCAAGCCCGATCATTGCACCGGCTGCGTGCGGGCCTGTTCGCGTATGCGTTTTGCACGT CGCTCTGGCTATCGCTCGCACTCGCCAGCGCCGGCCTTGTCCTGTCCGGCCCTGCACATGCGGCCGGCGCCGCCAGCGGC ACACCCGTCATTCCGGCGCTGCAAAGCCTGATCAATAGCGCGACGGTGTCGCCGGCTGCGCCCGCGTCGGGCGCATCGGC AGCCGATGCGGCGTCGGCGCCGTCACCCGCCAGCCAGGCGGAACTGACGAGATCGCTCGACAGCGTGATCAGCACGCTCG ACAACGACCACCAGCGCACCGCGCTCGTCGCGCAGCTGAAGAAGCTGCGCGACGCGTCGAAGACGGTCGGACCGCCCGTG ACCGCGCAGCCGAATCCCGGTTCGGGGCTGCTGGGCGCGATCGCGGCGGGCATCGCGTCGTTCGAATCGGACGTGCATCA GGGCCGCTCTCCCCTCAATTACTGGTCCGGCCGCTTCAACGCGGCGGGCAACGAGATCTACACGATTGTCACGAGCCAGG GGCGCGAGCACTTCGGCCAGGTGCTGCTGACCATGTTCGCCGTGCTCGCCGGATGGGGCGCGTGCGCGGCGGCGCTCATC TATGTGCAGCGCAGGATTCACGCGCGCTTCGGCATCGTCGTACGGCTGGATGCGAATCCCACCACGCGCGATCTGCTGAT CTTCGCGCTGCGCCGCGTGGGTCCGTGGATCGTCGCGTTCGTCGCCGCGTTGATGTTCGTGCGTGCGATGCCCGATTCGC TCGGCCGCACGATCGCGATGGTGATCGCGTACGCGATCGTCGCGGGTGCGGTGTTCTCGGCGATCTGCCTGATCATGTTC TCGCTGTTCGGTTCGGGGCATCGGCGCGCGGCCGTGCGCGTGCTGATCGAGCAGGGGCGGCGGCTGCTGTTCGCGATCGG CATTTGCAGCGCGCTCGGCGATGCCGCCGTCAACTACGATGTCGCGCATGAACTCGGCACGAATCTCGCGGCGCTCGTAT CGACGGTTTCGAACATGACGGCGGCGGCGCTGACCGCTTATTTTGCGCTGGCGTTCCGGCGTCCCGTCGCGCATCTGATC CGCAATCGCGCATACGAGCAGCGTCACGATCACAAGGCCGCGACCGACGCGTTCGACGTGCTCGCCTCGCTATGGCACGT GCCGATGCTGGTGCTCGCGACAGCCTCCGTGATCGCGACGATCGGCGGTATCGGCAGCGGCGAGAATGTGTTGCAGATTT CCGTCGTGACGGCGCTGCTGCTGGTGCTGGCGTTCTTTCTGTCGGCCGTCGTGCTGCGCGTGACGCGTCCGCGCAGCGCG CGACGCCGACGCCGCTCGCCCTATCTGACGCGGCTGCTGCGCTTTGTCGGCACGCTGATTACGCTGTTCGTCTGGCTCGC GTATTTCGAGTTCGCCGCGCGGCTGTGGGATGTGTCGCTCGCGCAGATCATCGAGGAAAGCGTGACGGCGCGCGGCATCG CGCACGCACTCACTGCAATTATCATCACAGTGTTTTTGTCGTGGCTCGTGTGGATCCTGATCGATACGGCGATTCAGGAA GCCGTCAATCCAAGCAGCCCGCGCAACAAGTCGAAGAACCCGAGCATGCGCGCACGCACGATGCTGCCGCTCGTGCGCAA CGTGCTGTTCGTGACCATCCTGACGATCGCGGGCATCGTCACGGCGGCGAACCTCGGCATCAACGTGACGCCGCTGCTGG CGGGCGCCGGCGTGATCGGTCTCGCGATTGGCTTCGGCGCGCAGTCGCTGGTGAGCGATCTGATTACGGGCCTTTTCATT ATCATCGAGGACACGATTTCGGTCGGCGACTGGATCGATATCGACGGCGGCCATGCGGGCACGGTTGAATATCTGTCGAT CCGCACGGTGCGTCTGCGCGACGGCCAGGGCGCGATTCACGCCATTCCTTTTTCGCAGATCAAGATCGTGAAGAACCTGT CGCGCGATTTTGCGTATGCGGTGTTCGAAGTGCGTGTGCCGTTCTCCGCCGATGTCGATGAAGTGACGCAGCTGATTCGC GCTGTCGGCGCGGACCTGATGGCGGACTTCCGTTACCGGCGCGAGATGCTCGGACCTGTCGAAGTCTGGGGGCTCGATCG CTTCGATCCCAACTGGATGGTCGTCAAAGGCCAGATCAAGACGCGGCCGCTGCAGCAATGGAGCGTGGCACGTGCGTTCA ACCTGCGTTTGAAGCGCAAGATGGACGAAGCGGGCATCGAGATCCCTGTGCCGCAGATGCGCGTGCATACGTCACGAGGC GACGAAGTCGGCGAAGCGCTGATGGAAGAAGATGTCGCACAGCACGACGTCGCGCAGCATGGGGCGCACGCGCGCGAAGC CGCGACGGGCACGACGACACCGTTCAGGCCGAAGACGGGTGCTCCCGTGCCGCCGGCGCGCGACGTATCGCACGAGCCGC GTCCAGCGCCGCCGTCGACGGGACAGACGGCCTCCGTGCCGCCGCAGATTCCGACGGCGGGCGACGGTGGCAAGACGTGA
Upstream 100 bases:
>100_bases TCGGTTACGCATCGGGGAGTTTTCCCTCGACGACACCCGCTACACTTGGCGTCTCCCGTCCCGTGCAACCTGAACGGTTG CTGCACAGTCACGGATTGCC
Downstream 100 bases:
>100_bases AAGCGATGAGTTTTCGACAATGAAAAGGGCGTCACGCGGCCAGGCGAGACGCCCCTTCATTTGATGCGGGCGGGACGGAT ACGCAATCAGGCAGCAACGG
Product: mechanosensitive ion channel MscS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MKSCPARRESRAAPSSGGLLAIDAGFRIVFGFFSQARSLHRLRAGLFAYAFCTSLWLSLALASAGLVLSGPAHAAGAASG TPVIPALQSLINSATVSPAAPASGASAADAASAPSPASQAELTRSLDSVISTLDNDHQRTALVAQLKKLRDASKTVGPPV TAQPNPGSGLLGAIAAGIASFESDVHQGRSPLNYWSGRFNAAGNEIYTIVTSQGREHFGQVLLTMFAVLAGWGACAAALI YVQRRIHARFGIVVRLDANPTTRDLLIFALRRVGPWIVAFVAALMFVRAMPDSLGRTIAMVIAYAIVAGAVFSAICLIMF SLFGSGHRRAAVRVLIEQGRRLLFAIGICSALGDAAVNYDVAHELGTNLAALVSTVSNMTAAALTAYFALAFRRPVAHLI RNRAYEQRHDHKAATDAFDVLASLWHVPMLVLATASVIATIGGIGSGENVLQISVVTALLLVLAFFLSAVVLRVTRPRSA RRRRRSPYLTRLLRFVGTLITLFVWLAYFEFAARLWDVSLAQIIEESVTARGIAHALTAIIITVFLSWLVWILIDTAIQE AVNPSSPRNKSKNPSMRARTMLPLVRNVLFVTILTIAGIVTAANLGINVTPLLAGAGVIGLAIGFGAQSLVSDLITGLFI IIEDTISVGDWIDIDGGHAGTVEYLSIRTVRLRDGQGAIHAIPFSQIKIVKNLSRDFAYAVFEVRVPFSADVDEVTQLIR AVGADLMADFRYRREMLGPVEVWGLDRFDPNWMVVKGQIKTRPLQQWSVARAFNLRLKRKMDEAGIEIPVPQMRVHTSRG DEVGEALMEEDVAQHDVAQHGAHAREAATGTTTPFRPKTGAPVPPARDVSHEPRPAPPSTGQTASVPPQIPTAGDGGKT
Sequences:
>Translated_879_residues MKSCPARRESRAAPSSGGLLAIDAGFRIVFGFFSQARSLHRLRAGLFAYAFCTSLWLSLALASAGLVLSGPAHAAGAASG TPVIPALQSLINSATVSPAAPASGASAADAASAPSPASQAELTRSLDSVISTLDNDHQRTALVAQLKKLRDASKTVGPPV TAQPNPGSGLLGAIAAGIASFESDVHQGRSPLNYWSGRFNAAGNEIYTIVTSQGREHFGQVLLTMFAVLAGWGACAAALI YVQRRIHARFGIVVRLDANPTTRDLLIFALRRVGPWIVAFVAALMFVRAMPDSLGRTIAMVIAYAIVAGAVFSAICLIMF SLFGSGHRRAAVRVLIEQGRRLLFAIGICSALGDAAVNYDVAHELGTNLAALVSTVSNMTAAALTAYFALAFRRPVAHLI RNRAYEQRHDHKAATDAFDVLASLWHVPMLVLATASVIATIGGIGSGENVLQISVVTALLLVLAFFLSAVVLRVTRPRSA RRRRRSPYLTRLLRFVGTLITLFVWLAYFEFAARLWDVSLAQIIEESVTARGIAHALTAIIITVFLSWLVWILIDTAIQE AVNPSSPRNKSKNPSMRARTMLPLVRNVLFVTILTIAGIVTAANLGINVTPLLAGAGVIGLAIGFGAQSLVSDLITGLFI IIEDTISVGDWIDIDGGHAGTVEYLSIRTVRLRDGQGAIHAIPFSQIKIVKNLSRDFAYAVFEVRVPFSADVDEVTQLIR AVGADLMADFRYRREMLGPVEVWGLDRFDPNWMVVKGQIKTRPLQQWSVARAFNLRLKRKMDEAGIEIPVPQMRVHTSRG DEVGEALMEEDVAQHDVAQHGAHAREAATGTTTPFRPKTGAPVPPARDVSHEPRPAPPSTGQTASVPPQIPTAGDGGKT >Mature_879_residues MKSCPARRESRAAPSSGGLLAIDAGFRIVFGFFSQARSLHRLRAGLFAYAFCTSLWLSLALASAGLVLSGPAHAAGAASG TPVIPALQSLINSATVSPAAPASGASAADAASAPSPASQAELTRSLDSVISTLDNDHQRTALVAQLKKLRDASKTVGPPV TAQPNPGSGLLGAIAAGIASFESDVHQGRSPLNYWSGRFNAAGNEIYTIVTSQGREHFGQVLLTMFAVLAGWGACAAALI YVQRRIHARFGIVVRLDANPTTRDLLIFALRRVGPWIVAFVAALMFVRAMPDSLGRTIAMVIAYAIVAGAVFSAICLIMF SLFGSGHRRAAVRVLIEQGRRLLFAIGICSALGDAAVNYDVAHELGTNLAALVSTVSNMTAAALTAYFALAFRRPVAHLI RNRAYEQRHDHKAATDAFDVLASLWHVPMLVLATASVIATIGGIGSGENVLQISVVTALLLVLAFFLSAVVLRVTRPRSA RRRRRSPYLTRLLRFVGTLITLFVWLAYFEFAARLWDVSLAQIIEESVTARGIAHALTAIIITVFLSWLVWILIDTAIQE AVNPSSPRNKSKNPSMRARTMLPLVRNVLFVTILTIAGIVTAANLGINVTPLLAGAGVIGLAIGFGAQSLVSDLITGLFI IIEDTISVGDWIDIDGGHAGTVEYLSIRTVRLRDGQGAIHAIPFSQIKIVKNLSRDFAYAVFEVRVPFSADVDEVTQLIR AVGADLMADFRYRREMLGPVEVWGLDRFDPNWMVVKGQIKTRPLQQWSVARAFNLRLKRKMDEAGIEIPVPQMRVHTSRG DEVGEALMEEDVAQHDVAQHGAHAREAATGTTTPFRPKTGAPVPPARDVSHEPRPAPPSTGQTASVPPQIPTAGDGGKT
Specific function: Unknown
COG id: COG0668
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=271, Percent_Identity=35.4243542435424, Blast_Score=130, Evalue=5e-31, Organism=Escherichia coli, GI1789291, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 94041; Mature: 94041
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSCPARRESRAAPSSGGLLAIDAGFRIVFGFFSQARSLHRLRAGLFAYAFCTSLWLSLA CCCCCCCHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASAGLVLSGPAHAAGAASGTPVIPALQSLINSATVSPAAPASGASAADAASAPSPASQA HHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH ELTRSLDSVISTLDNDHQRTALVAQLKKLRDASKTVGPPVTAQPNPGSGLLGAIAAGIAS HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH FESDVHQGRSPLNYWSGRFNAAGNEIYTIVTSQGREHFGQVLLTMFAVLAGWGACAAALI HHHHHHCCCCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHH YVQRRIHARFGIVVRLDANPTTRDLLIFALRRVGPWIVAFVAALMFVRAMPDSLGRTIAM HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VIAYAIVAGAVFSAICLIMFSLFGSGHRRAAVRVLIEQGRRLLFAIGICSALGDAAVNYD HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHH VAHELGTNLAALVSTVSNMTAAALTAYFALAFRRPVAHLIRNRAYEQRHDHKAATDAFDV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASLWHVPMLVLATASVIATIGGIGSGENVLQISVVTALLLVLAFFLSAVVLRVTRPRSA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH RRRRRSPYLTRLLRFVGTLITLFVWLAYFEFAARLWDVSLAQIIEESVTARGIAHALTAI HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IITVFLSWLVWILIDTAIQEAVNPSSPRNKSKNPSMRARTMLPLVRNVLFVTILTIAGIV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH TAANLGINVTPLLAGAGVIGLAIGFGAQSLVSDLITGLFIIIEDTISVGDWIDIDGGHAG HHHHCCCCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC TVEYLSIRTVRLRDGQGAIHAIPFSQIKIVKNLSRDFAYAVFEVRVPFSADVDEVTQLIR CEEEEEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHEEHEEEECCCCCCHHHHHHHHH AVGADLMADFRYRREMLGPVEVWGLDRFDPNWMVVKGQIKTRPLQQWSVARAFNLRLKRK HHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH MDEAGIEIPVPQMRVHTSRGDEVGEALMEEDVAQHDVAQHGAHAREAATGTTTPFRPKTG HHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC APVPPARDVSHEPRPAPPSTGQTASVPPQIPTAGDGGKT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKSCPARRESRAAPSSGGLLAIDAGFRIVFGFFSQARSLHRLRAGLFAYAFCTSLWLSLA CCCCCCCHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASAGLVLSGPAHAAGAASGTPVIPALQSLINSATVSPAAPASGASAADAASAPSPASQA HHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH ELTRSLDSVISTLDNDHQRTALVAQLKKLRDASKTVGPPVTAQPNPGSGLLGAIAAGIAS HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH FESDVHQGRSPLNYWSGRFNAAGNEIYTIVTSQGREHFGQVLLTMFAVLAGWGACAAALI HHHHHHCCCCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHH YVQRRIHARFGIVVRLDANPTTRDLLIFALRRVGPWIVAFVAALMFVRAMPDSLGRTIAM HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VIAYAIVAGAVFSAICLIMFSLFGSGHRRAAVRVLIEQGRRLLFAIGICSALGDAAVNYD HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHH VAHELGTNLAALVSTVSNMTAAALTAYFALAFRRPVAHLIRNRAYEQRHDHKAATDAFDV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASLWHVPMLVLATASVIATIGGIGSGENVLQISVVTALLLVLAFFLSAVVLRVTRPRSA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH RRRRRSPYLTRLLRFVGTLITLFVWLAYFEFAARLWDVSLAQIIEESVTARGIAHALTAI HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IITVFLSWLVWILIDTAIQEAVNPSSPRNKSKNPSMRARTMLPLVRNVLFVTILTIAGIV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH TAANLGINVTPLLAGAGVIGLAIGFGAQSLVSDLITGLFIIIEDTISVGDWIDIDGGHAG HHHHCCCCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC TVEYLSIRTVRLRDGQGAIHAIPFSQIKIVKNLSRDFAYAVFEVRVPFSADVDEVTQLIR CEEEEEEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHEEHEEEECCCCCCHHHHHHHHH AVGADLMADFRYRREMLGPVEVWGLDRFDPNWMVVKGQIKTRPLQQWSVARAFNLRLKRK HHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH MDEAGIEIPVPQMRVHTSRGDEVGEALMEEDVAQHDVAQHGAHAREAATGTTTPFRPKTG HHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC APVPPARDVSHEPRPAPPSTGQTASVPPQIPTAGDGGKT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]