Click here to switch to the map view.

The map label for this gene is ybaO [H]

Identifier: 186476510

GI number: 186476510

Start: 2001918

End: 2002400

Strand: Reverse

Name: ybaO [H]

Synonym: Bphy_1752

Alternate gene names: 186476510

Gene position: 2002400-2001918 (Counterclockwise)

Preceding gene: 186476512

Following gene: 186476509

Centisome position: 57.55

GC content: 63.15

Gene sequence:

>483_bases
ATGGGAATGGACATCATTGATCGGCGGCTGCTCGAACTCCTTCAGGAAGACGCCACGATGCCGATCGCCGAACTCGCGGC
GCGCGTGAACCTGTCGCAGACGCCGTGCTGGAAGCGGGTTCAGCGTCTCAAGGAAGCGGGCGTGATCCGCGCGCAGGTCG
CGCTGTGCGATCCGCGCAAACTGGGCGTCGGCACGACCGTGTTTGTCGCCGTGCGCACGAACCAGCACACGGAATCCTGG
GCGCAGACCTTTACGAGGGCGGTGCAGGACATTCCCGAAGTGGTCGAGGTATACCGGATGAGCGGCGAGACCGACTATCT
GCTGCGCGTCGTCGTGTCCGACATCGACGACTACGACCGCGTCTACAAGCAACTGATTCGCTCCGTGCCGCTTTACGACG
TCAGTTCCAGTTTCGCGATGGAGCAGATCAAGTATTCGACGGCGTTGCCGGTGCGGGCCGCCGTCGTCGCCGAAAGCCGC
TGA

Upstream 100 bases:

>100_bases
GGGATTGCCCTCATTTATACCGATTTGCGCGGAGAAAGAGTTTTCATATAATTCCGTCGTCTTGACGAGAAATAGAATAA
TTTTCTATCTGGGTGGGAAG

Downstream 100 bases:

>100_bases
TCACGCGGCGTTGCACAGTCGGACTGCGCGTGCGCATGGCGGACTGCAAGCCGCGCGCAAGGTGCTTCGGCGTAGAATGC
CCGCTCCGTCGAATCAAACC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MGMDIIDRRLLELLQEDATMPIAELAARVNLSQTPCWKRVQRLKEAGVIRAQVALCDPRKLGVGTTVFVAVRTNQHTESW
AQTFTRAVQDIPEVVEVYRMSGETDYLLRVVVSDIDDYDRVYKQLIRSVPLYDVSSSFAMEQIKYSTALPVRAAVVAESR

Sequences:

>Translated_160_residues
MGMDIIDRRLLELLQEDATMPIAELAARVNLSQTPCWKRVQRLKEAGVIRAQVALCDPRKLGVGTTVFVAVRTNQHTESW
AQTFTRAVQDIPEVVEVYRMSGETDYLLRVVVSDIDDYDRVYKQLIRSVPLYDVSSSFAMEQIKYSTALPVRAAVVAESR
>Mature_159_residues
GMDIIDRRLLELLQEDATMPIAELAARVNLSQTPCWKRVQRLKEAGVIRAQVALCDPRKLGVGTTVFVAVRTNQHTESWA
QTFTRAVQDIPEVVEVYRMSGETDYLLRVVVSDIDDYDRVYKQLIRSVPLYDVSSSFAMEQIKYSTALPVRAAVVAESR

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=52.6666666666667, Blast_Score=173, Evalue=4e-45,
Organism=Escherichia coli, GI1787116, Length=152, Percent_Identity=34.8684210526316, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18120; Mature: 17989

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMDIIDRRLLELLQEDATMPIAELAARVNLSQTPCWKRVQRLKEAGVIRAQVALCDPRK
CCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHEECCCCC
LGVGTTVFVAVRTNQHTESWAQTFTRAVQDIPEVVEVYRMSGETDYLLRVVVSDIDDYDR
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHH
VYKQLIRSVPLYDVSSSFAMEQIKYSTALPVRAAVVAESR
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
GMDIIDRRLLELLQEDATMPIAELAARVNLSQTPCWKRVQRLKEAGVIRAQVALCDPRK
CCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHEECCCCC
LGVGTTVFVAVRTNQHTESWAQTFTRAVQDIPEVVEVYRMSGETDYLLRVVVSDIDDYDR
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHH
VYKQLIRSVPLYDVSSSFAMEQIKYSTALPVRAAVVAESR
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]