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The map label for this gene is recD [H]

Identifier: 186476505

GI number: 186476505

Start: 1989853

End: 1991871

Strand: Reverse

Name: recD [H]

Synonym: Bphy_1747

Alternate gene names: 186476505

Gene position: 1991871-1989853 (Counterclockwise)

Preceding gene: 186476506

Following gene: 186476503

Centisome position: 57.25

GC content: 68.75

Gene sequence:

>2019_bases
GTGAGCACATTCGATCAGCCGTTGCCCGACGTCAAGGTCAATGTTCCCGCGCCTGCGGACTTCAGCACGGCGCTCGCGGA
AGGTTTCGCGCGGCGGGTGAGTGCACTCGCGCTGCGCGGCGGTGCGTCCGAAGACGCCGTGCGCTGGGCCGCGCGGGCCG
CGTTCAGTGCGAGTCGCGCGACATCGGAAGGACATGTGTGCACGTCGCTGGACGAACTCGCGCAACGTTACGAGGCCGAG
GTCGCGCATGTGCGCTGCGCGCTGCTCGCAAGCGGCGTCGCAAGCGATGGCATGCAGCCGGCCTATGCGCTGCGACCGCT
CGTCGTCGACGGGCAGGGGCGACTCTATCTCGCGCGGTACTACGACTACGAGCGCCGGCTCGCGCAGTCACTCGTCGATC
ACGCACGCGTCGAGCATGAGGATGGCGTGTCCGGCGAGATGTCGCCGCATGCTTTGCGCGAAAGACTGCTGCGCTATTTC
GGTCCGCCGCAGGACGAGCAGATCGACTGGCAGCGCGTAGCCGCCGTGATGGCGCTGTCGGGGCGGCTGACGATCGTCAG
CGGCGGTCCGGGCACGGGCAAGACGACGACGGTGGTGGGCGTGCTCGCGTGCCTGCTGGACGCGCGCCCCGCTCTGCGTG
TCGCGCTTGCCGCGCCGACAGGCAAGGCTGCGCAGCGAATGCAGGAGGCGCTGCTCGCGCGCGCCGGATCGTTGCCGCCC
GAACTCGCCGCGCGTCTGCCGCACACCTCGTTCACCCTGCACCGGCTGCTGGGTACGGGGCCGGACGGGCGTTTCCGGCA
CCATCGCGAGAATCCGCTGCCCTACGACGTGATCGTGATCGACGAGGCGTCGATGATCGACGTTGCGATGGCGACGCATC
TGTTCGATGCGCTCGCACGCGACACGCATCTCGTGATGCTCGGCGACAAGGATCAGCTCGCCGCCGTCGAAGCGGGTGCG
GTATTCGGCGAGTTGAGCGCGCAGCCTGCTTTCACGGCACAGGGCGTCGGTTCGATCGCGGCCGCGCTGGGTATCGGCGA
ACGCTCGCTGCGCGATGCACTGCCCGCCACCGCCATCTGTCACGATGCGCGTTCAGACCAGGCTGAACCTTTGTTCGACG
ATCTGTTCGCCATGTCCTCCGGCGCGCCGTCTGAAGCGAAACCGGCGCGGCTCGCGCCGCTTGCGGATTGCGTTGTATGG
CTGGAGCGCAATTACCGCTTCGGACTGGAATCGGCGATCGGCCGTTTGTCGCTTGCCATTCGGCGCGGCGCAGCACAGGA
AGCGCTCGACGTGATGGACATCGATCCCGCCGTCCCCTGCGCGGCCGCGTTTCATGAAGACATGGACGCTGCCCCTTCCG
AGCACACGATCCACCGCCTCGCCGCTGGCTTCGCTGCGTATGCGGATGCGCTGACCGCCGCGCTCTTCAGCACATCGGCA
AACGCGGCGTCGCACGCGCCCGCGCTCTTCGACGCGCTCAATCGCTTCCGCATCCTGTGTGCGACGCGTCTCGGCGCACG
CGGCGTCGATCACATGAACGCGGCGATGGCCGCGCAGGTGCGCCGTGCCGCGCGCATGCCGCTCGCGATCGGTGCGCAAT
GGTTCGCCGGCCGCCCAATCATGGTGACGCGCAACGACTATGCGCTGGGGCTGTTCAATGGCGATATCGGCATCGCGCTG
CCGGGCGCGGACGGCGCGTTGCGCGTCTTCTTCCGCGGCGCGGACGGCGCTCTGCGCGCCGTGTCACCCGCCGCGCTCCC
GCCGCACGATACTGCGTTCGCGCTCACCGTCCACAAGTCGCAGGGCTCGGAGTTCGATCATGCCGTGCTGATGCTGCCGT
CCACATTCAGCCGTGTGCTGTCGCGCGAGCTGGTCTATACGGCCGTGACGCGGGCGCGCGAGCGGGTCGAAGTGGTCGGC
TCGCGCGCTGTGCTGATGCGCGCGATCGCGACGCCGACCCAGCGCGATTCGGGACTGGCTGCGCGGATCGCCGAGGCGAT
GGAAGCGGGTGGGCGTTAG

Upstream 100 bases:

>100_bases
CCGCCTGGCGCGACGGCGGCCACGTTGCGGGCGTGCATGTGCGACGGCCCGAGCATGCGCTCGTCGTCGCGCTCGATGCA
CTGATGAGCGGAGGCTCGCC

Downstream 100 bases:

>100_bases
TTGGCTGCCGTGCCGCGCGGCGGCTCCGCTTCGGAATCGGTCTGATCCTGCGCGAGATCGCGCAGCGTGCGCCGGTACCA
GAGCGTCCAGATCATCAGCC

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 672; Mature: 671

Protein sequence:

>672_residues
MSTFDQPLPDVKVNVPAPADFSTALAEGFARRVSALALRGGASEDAVRWAARAAFSASRATSEGHVCTSLDELAQRYEAE
VAHVRCALLASGVASDGMQPAYALRPLVVDGQGRLYLARYYDYERRLAQSLVDHARVEHEDGVSGEMSPHALRERLLRYF
GPPQDEQIDWQRVAAVMALSGRLTIVSGGPGTGKTTTVVGVLACLLDARPALRVALAAPTGKAAQRMQEALLARAGSLPP
ELAARLPHTSFTLHRLLGTGPDGRFRHHRENPLPYDVIVIDEASMIDVAMATHLFDALARDTHLVMLGDKDQLAAVEAGA
VFGELSAQPAFTAQGVGSIAAALGIGERSLRDALPATAICHDARSDQAEPLFDDLFAMSSGAPSEAKPARLAPLADCVVW
LERNYRFGLESAIGRLSLAIRRGAAQEALDVMDIDPAVPCAAAFHEDMDAAPSEHTIHRLAAGFAAYADALTAALFSTSA
NAASHAPALFDALNRFRILCATRLGARGVDHMNAAMAAQVRRAARMPLAIGAQWFAGRPIMVTRNDYALGLFNGDIGIAL
PGADGALRVFFRGADGALRAVSPAALPPHDTAFALTVHKSQGSEFDHAVLMLPSTFSRVLSRELVYTAVTRARERVEVVG
SRAVLMRAIATPTQRDSGLAARIAEAMEAGGR

Sequences:

>Translated_672_residues
MSTFDQPLPDVKVNVPAPADFSTALAEGFARRVSALALRGGASEDAVRWAARAAFSASRATSEGHVCTSLDELAQRYEAE
VAHVRCALLASGVASDGMQPAYALRPLVVDGQGRLYLARYYDYERRLAQSLVDHARVEHEDGVSGEMSPHALRERLLRYF
GPPQDEQIDWQRVAAVMALSGRLTIVSGGPGTGKTTTVVGVLACLLDARPALRVALAAPTGKAAQRMQEALLARAGSLPP
ELAARLPHTSFTLHRLLGTGPDGRFRHHRENPLPYDVIVIDEASMIDVAMATHLFDALARDTHLVMLGDKDQLAAVEAGA
VFGELSAQPAFTAQGVGSIAAALGIGERSLRDALPATAICHDARSDQAEPLFDDLFAMSSGAPSEAKPARLAPLADCVVW
LERNYRFGLESAIGRLSLAIRRGAAQEALDVMDIDPAVPCAAAFHEDMDAAPSEHTIHRLAAGFAAYADALTAALFSTSA
NAASHAPALFDALNRFRILCATRLGARGVDHMNAAMAAQVRRAARMPLAIGAQWFAGRPIMVTRNDYALGLFNGDIGIAL
PGADGALRVFFRGADGALRAVSPAALPPHDTAFALTVHKSQGSEFDHAVLMLPSTFSRVLSRELVYTAVTRARERVEVVG
SRAVLMRAIATPTQRDSGLAARIAEAMEAGGR
>Mature_671_residues
STFDQPLPDVKVNVPAPADFSTALAEGFARRVSALALRGGASEDAVRWAARAAFSASRATSEGHVCTSLDELAQRYEAEV
AHVRCALLASGVASDGMQPAYALRPLVVDGQGRLYLARYYDYERRLAQSLVDHARVEHEDGVSGEMSPHALRERLLRYFG
PPQDEQIDWQRVAAVMALSGRLTIVSGGPGTGKTTTVVGVLACLLDARPALRVALAAPTGKAAQRMQEALLARAGSLPPE
LAARLPHTSFTLHRLLGTGPDGRFRHHRENPLPYDVIVIDEASMIDVAMATHLFDALARDTHLVMLGDKDQLAAVEAGAV
FGELSAQPAFTAQGVGSIAAALGIGERSLRDALPATAICHDARSDQAEPLFDDLFAMSSGAPSEAKPARLAPLADCVVWL
ERNYRFGLESAIGRLSLAIRRGAAQEALDVMDIDPAVPCAAAFHEDMDAAPSEHTIHRLAAGFAAYADALTAALFSTSAN
AASHAPALFDALNRFRILCATRLGARGVDHMNAAMAAQVRRAARMPLAIGAQWFAGRPIMVTRNDYALGLFNGDIGIALP
GADGALRVFFRGADGALRAVSPAALPPHDTAFALTVHKSQGSEFDHAVLMLPSTFSRVLSRELVYTAVTRARERVEVVGS
RAVLMRAIATPTQRDSGLAARIAEAMEAGGR

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=628, Percent_Identity=39.8089171974522, Blast_Score=325, Evalue=6e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 71398; Mature: 71267

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFDQPLPDVKVNVPAPADFSTALAEGFARRVSALALRGGASEDAVRWAARAAFSASRA
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
TSEGHVCTSLDELAQRYEAEVAHVRCALLASGVASDGMQPAYALRPLVVDGQGRLYLARY
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEECCCCCEEEEEH
YDYERRLAQSLVDHARVEHEDGVSGEMSPHALRERLLRYFGPPQDEQIDWQRVAAVMALS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
GRLTIVSGGPGTGKTTTVVGVLACLLDARPALRVALAAPTGKAAQRMQEALLARAGSLPP
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHHHHCCCCCH
ELAARLPHTSFTLHRLLGTGPDGRFRHHRENPLPYDVIVIDEASMIDVAMATHLFDALAR
HHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
DTHLVMLGDKDQLAAVEAGAVFGELSAQPAFTAQGVGSIAAALGIGERSLRDALPATAIC
CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCHHHHH
HDARSDQAEPLFDDLFAMSSGAPSEAKPARLAPLADCVVWLERNYRFGLESAIGRLSLAI
HCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RRGAAQEALDVMDIDPAVPCAAAFHEDMDAAPSEHTIHRLAAGFAAYADALTAALFSTSA
HHCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
NAASHAPALFDALNRFRILCATRLGARGVDHMNAAMAAQVRRAARMPLAIGAQWFAGRPI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHCCCCE
MVTRNDYALGLFNGDIGIALPGADGALRVFFRGADGALRAVSPAALPPHDTAFALTVHKS
EEECCCEEEEEEECCEEEEECCCCCEEEEEEECCCCCHHCCCCCCCCCCCCEEEEEEECC
QGSEFDHAVLMLPSTFSRVLSRELVYTAVTRARERVEVVGSRAVLMRAIATPTQRDSGLA
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ARIAEAMEAGGR
HHHHHHHHCCCC
>Mature Secondary Structure 
STFDQPLPDVKVNVPAPADFSTALAEGFARRVSALALRGGASEDAVRWAARAAFSASRA
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
TSEGHVCTSLDELAQRYEAEVAHVRCALLASGVASDGMQPAYALRPLVVDGQGRLYLARY
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEECCCCCEEEEEH
YDYERRLAQSLVDHARVEHEDGVSGEMSPHALRERLLRYFGPPQDEQIDWQRVAAVMALS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
GRLTIVSGGPGTGKTTTVVGVLACLLDARPALRVALAAPTGKAAQRMQEALLARAGSLPP
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHHHHCCCCCH
ELAARLPHTSFTLHRLLGTGPDGRFRHHRENPLPYDVIVIDEASMIDVAMATHLFDALAR
HHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
DTHLVMLGDKDQLAAVEAGAVFGELSAQPAFTAQGVGSIAAALGIGERSLRDALPATAIC
CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCHHHHH
HDARSDQAEPLFDDLFAMSSGAPSEAKPARLAPLADCVVWLERNYRFGLESAIGRLSLAI
HCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RRGAAQEALDVMDIDPAVPCAAAFHEDMDAAPSEHTIHRLAAGFAAYADALTAALFSTSA
HHCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
NAASHAPALFDALNRFRILCATRLGARGVDHMNAAMAAQVRRAARMPLAIGAQWFAGRPI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHCCCCE
MVTRNDYALGLFNGDIGIALPGADGALRVFFRGADGALRAVSPAALPPHDTAFALTVHKS
EEECCCEEEEEEECCEEEEECCCCCEEEEEEECCCCCHHCCCCCCCCCCCCEEEEEEECC
QGSEFDHAVLMLPSTFSRVLSRELVYTAVTRARERVEVVGSRAVLMRAIATPTQRDSGLA
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ARIAEAMEAGGR
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]