| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is lgrC [H]
Identifier: 186476431
GI number: 186476431
Start: 1896470
End: 1898800
Strand: Direct
Name: lgrC [H]
Synonym: Bphy_1673
Alternate gene names: 186476431
Gene position: 1896470-1898800 (Clockwise)
Preceding gene: 186476430
Following gene: 186476432
Centisome position: 54.51
GC content: 65.21
Gene sequence:
>2331_bases ATGAACGGGATCACCTTGAATCTCGTGCCCGACTACGAGATCGATGCCGGCTACGCGCTGTTCCCTGCGACCGCCTGCCA GACACGGTTCTGGCATGAGCAGAAGGCGTCGCCGAAAGCTTCCGCGCTCAACAGCGCGTTCCGGCTGCAATTGTCGGGGC CGCTGAAAGCCGCGAGCATCGAACAGGTGCTGTGCGAACTGGTCGCGCGACACGAGATATTGCGTACCGGCTTCCAGATG ACGGGTGCGGGGCTGCGCCAGCAGGTCGCGAGCCGCGTCCCCTTCAAGCTCGACGTGGTCGACCTGACGGGCTTCGAGGA AAAGGCCGCCCTTGCGGAGGCCGAGCGGGTCGGCCGGCTACAGGCCAGCACGCCGTTCGACTTGTCGTCCCCCTCCTTCT TCCGGGCCGTGTGGCTGCCCAGGTCGCCCACGCAGGGTGAACTGCAGCTGACTTTCCATTCGCTTGTCATCGATGGCTGG TCGTTCGCGATCCTCGTGTGCGAACTCGTGGAAGGGCTTGCCGCGTTGCATGCCGGCCATGATCCCCAATTCGCCGATGT CGAGCTTCACCATGGTGACTACGCGCTCTGGAAGGAAGAGTTCGTTGCCAGCGGCGCGCTCGACCGCGCTCGCGCCCATT GGCGCCAGGAACTTCGCGATTTCCGCCGCTTCGAGGTTCCGGGCGATCGCCCCCGGCCGCAGCAGCGGCGCTTCCAGGGC GTGATTCGTTCCATCCTGTTGCCCGGCGCGCTCGGCGACCGCCTCAGCGCGGCGGCCAAGGCCCAGGGCGTCACGCTGTT CAGCGTAGCGGCGGCTGGCCTCGCGATGGCGCTGCAAACGGCGACCGGCCAGAGCCGGGTTGCCATGGGCACCCAGATGT CGGTGCGGGATCAGCAGGAGCTCGAGGGCGTGATCGGACCGCTCATCAACACGGTGATCCTGCGCCTCGACGTGCCTCAC GGCAGCACCCTCGCCGCCGTTACCGCACAGTGTGGCGCCAAGCTCAGCGACGCCATCGAACACCTTCACCTGTCATTCGA AGAAATGATAGAGCTGGCCGGCGAGGTTGCCGATCCGGATCGTCCGCCGCTATGCCCCGTCAATTTCGCCCTGCAGCAAA GCTTCGTCGGCGTAGGCGATGAGGTTCGCCGTCAGGATTTCTCTGCGACGACCTCGCCCTCCTACAACGCGGGCGCGCTC TACGATCTCAACTTCTTCATGGTTCGGCGTCCTGAAGGCTGGCGCATCTCCTGCGAAGGCGACACGGACCTCTACGACGT CGAGACGATCGACGGGCATCTGGCAAAGTGGCGCGAGATGCTGGAAACCGTGGATAGCGAGGCGCAACGGCCGCTGGCGC TCCCTGCCGGGGGCGAGGCGGCGAAATTCGTCACGGGTGTCGGCGCGAGCGGTTTCATGAGTCAGGCCGAGCTGGCGGCG AAAGCGCGCAATATCGTGCGATACAACGAGAATGCGCCGGGCACGCCCGTCATCGCGCTCAACAATACGGGCGTGCTGTT CGGACTGGCTCAGCAGATCGGCTCGGACCGGCCGCTGATCGACATCCCGATGGTGCCCGAAGGCCCGCCGCGCGAGTTCC CGCCGCGCGCGTTCGAGGATATCGCCGCAGACGCGGTGCGGCTGATCAGGCTGGCCCAGCCCAAAGGTCCCTATATTCTC ATGGGCCTGTGCGTGCTCGGCGCGCTGTCACTGGAGGCGGCCCATCAGCTTCGGCGCGAAGGCGAAAGCGTGGAACTCGT TATCCTCAACGATTCCTGGTGCCCCGGCTATCGCGAGATGATGCCCTGGTACGATCGGGAGTTGCGCAAGATGCAAGTGC GTGCGGACAACATTCCGCGCGACTTCCGCAAGGCCGTGCGGGGCGAGACTTCCATGGTCTCGTTCCTCAAGCAGTACCGG ATCGTGCGCCGGCTCGGGATTGCAGACCTTGCGCTCAAGCTCGGGCTGATCAAGGACAAGGCTGCAGATCACACGATTGC AGAGAACCGCTGGTACATGGAATATCTGCTGGCCCAGCAGGCCCGGTACCGTCCGGCGCCCTACGACGGCAACGTGCAGA TTTTCCGCAGCGATCAGGTGCTGAAGGGACGCCTGTTCGCGTGGGATCTGGGATGGCAGCGCGTGCTGACGGGCAAACAG GTCGTCACGCCGGTTCCGGGCATGCACGATCAGATGTTCCGCGCCGCCGGCGCTGCCGTGATCGGCAAGCAGGTGCGCGA GCACCTCGCCGAAATCGAGGCTGACAGCAACAAGGCCAGCGCCGGCGAGCAGCACGCGCCGTTAGACTGCGCAAGCCGTG CCGAAGCTTAG
Upstream 100 bases:
>100_bases CCTCGACGGCACGCAGGAGAACGAGGTGAAGCAGGCGCCTGCCGTGTTGCGTCCCTCGATCCACAACTTCAAACGCAGAC ATGCGGAGGGAGTCTGAGCG
Downstream 100 bases:
>100_bases ATCGTTGGGCGAACTGCTTATGTCCCGTTTGCGTCGAGTCGTACTGGCCGTGTTTTGCGGCGCACTGACGGTAGCCGGCC TCGTCTTTATCAAACTGGGC
Product: condensation domain-containing protein
Products: NA
Alternate protein names: ATP-dependent valine adenylase; ValA; Valine activase; ATP-dependent D-valine adenylase; D-ValA; D-valine activase; Valine racemase [ATP-hydrolyzing]; ATP-dependent tryptophan adenylase; TrpA; Tryptophan activase; ATP-dependent D-leucine adenylase; D-LeuA; D-leucine activase; Leucine racemase [ATP-hydrolyzing]; ATP-dependent tryptophan/phenylalanine/tyrosine adenylase; Trp/Phe/TyrA; Tryptophan/phenylalanine/tyrosine activase; ATP-dependent D-leucine adenylase; D-LeuA; D-leucine activase; Leucine racemase [ATP-hydrolyzing] [H]
Number of amino acids: Translated: 776; Mature: 776
Protein sequence:
>776_residues MNGITLNLVPDYEIDAGYALFPATACQTRFWHEQKASPKASALNSAFRLQLSGPLKAASIEQVLCELVARHEILRTGFQM TGAGLRQQVASRVPFKLDVVDLTGFEEKAALAEAERVGRLQASTPFDLSSPSFFRAVWLPRSPTQGELQLTFHSLVIDGW SFAILVCELVEGLAALHAGHDPQFADVELHHGDYALWKEEFVASGALDRARAHWRQELRDFRRFEVPGDRPRPQQRRFQG VIRSILLPGALGDRLSAAAKAQGVTLFSVAAAGLAMALQTATGQSRVAMGTQMSVRDQQELEGVIGPLINTVILRLDVPH GSTLAAVTAQCGAKLSDAIEHLHLSFEEMIELAGEVADPDRPPLCPVNFALQQSFVGVGDEVRRQDFSATTSPSYNAGAL YDLNFFMVRRPEGWRISCEGDTDLYDVETIDGHLAKWREMLETVDSEAQRPLALPAGGEAAKFVTGVGASGFMSQAELAA KARNIVRYNENAPGTPVIALNNTGVLFGLAQQIGSDRPLIDIPMVPEGPPREFPPRAFEDIAADAVRLIRLAQPKGPYIL MGLCVLGALSLEAAHQLRREGESVELVILNDSWCPGYREMMPWYDRELRKMQVRADNIPRDFRKAVRGETSMVSFLKQYR IVRRLGIADLALKLGLIKDKAADHTIAENRWYMEYLLAQQARYRPAPYDGNVQIFRSDQVLKGRLFAWDLGWQRVLTGKQ VVTPVPGMHDQMFRAAGAAVIGKQVREHLAEIEADSNKASAGEQHAPLDCASRAEA
Sequences:
>Translated_776_residues MNGITLNLVPDYEIDAGYALFPATACQTRFWHEQKASPKASALNSAFRLQLSGPLKAASIEQVLCELVARHEILRTGFQM TGAGLRQQVASRVPFKLDVVDLTGFEEKAALAEAERVGRLQASTPFDLSSPSFFRAVWLPRSPTQGELQLTFHSLVIDGW SFAILVCELVEGLAALHAGHDPQFADVELHHGDYALWKEEFVASGALDRARAHWRQELRDFRRFEVPGDRPRPQQRRFQG VIRSILLPGALGDRLSAAAKAQGVTLFSVAAAGLAMALQTATGQSRVAMGTQMSVRDQQELEGVIGPLINTVILRLDVPH GSTLAAVTAQCGAKLSDAIEHLHLSFEEMIELAGEVADPDRPPLCPVNFALQQSFVGVGDEVRRQDFSATTSPSYNAGAL YDLNFFMVRRPEGWRISCEGDTDLYDVETIDGHLAKWREMLETVDSEAQRPLALPAGGEAAKFVTGVGASGFMSQAELAA KARNIVRYNENAPGTPVIALNNTGVLFGLAQQIGSDRPLIDIPMVPEGPPREFPPRAFEDIAADAVRLIRLAQPKGPYIL MGLCVLGALSLEAAHQLRREGESVELVILNDSWCPGYREMMPWYDRELRKMQVRADNIPRDFRKAVRGETSMVSFLKQYR IVRRLGIADLALKLGLIKDKAADHTIAENRWYMEYLLAQQARYRPAPYDGNVQIFRSDQVLKGRLFAWDLGWQRVLTGKQ VVTPVPGMHDQMFRAAGAAVIGKQVREHLAEIEADSNKASAGEQHAPLDCASRAEA >Mature_776_residues MNGITLNLVPDYEIDAGYALFPATACQTRFWHEQKASPKASALNSAFRLQLSGPLKAASIEQVLCELVARHEILRTGFQM TGAGLRQQVASRVPFKLDVVDLTGFEEKAALAEAERVGRLQASTPFDLSSPSFFRAVWLPRSPTQGELQLTFHSLVIDGW SFAILVCELVEGLAALHAGHDPQFADVELHHGDYALWKEEFVASGALDRARAHWRQELRDFRRFEVPGDRPRPQQRRFQG VIRSILLPGALGDRLSAAAKAQGVTLFSVAAAGLAMALQTATGQSRVAMGTQMSVRDQQELEGVIGPLINTVILRLDVPH GSTLAAVTAQCGAKLSDAIEHLHLSFEEMIELAGEVADPDRPPLCPVNFALQQSFVGVGDEVRRQDFSATTSPSYNAGAL YDLNFFMVRRPEGWRISCEGDTDLYDVETIDGHLAKWREMLETVDSEAQRPLALPAGGEAAKFVTGVGASGFMSQAELAA KARNIVRYNENAPGTPVIALNNTGVLFGLAQQIGSDRPLIDIPMVPEGPPREFPPRAFEDIAADAVRLIRLAQPKGPYIL MGLCVLGALSLEAAHQLRREGESVELVILNDSWCPGYREMMPWYDRELRKMQVRADNIPRDFRKAVRGETSMVSFLKQYR IVRRLGIADLALKLGLIKDKAADHTIAENRWYMEYLLAQQARYRPAPYDGNVQIFRSDQVLKGRLFAWDLGWQRVLTGKQ VVTPVPGMHDQMFRAAGAAVIGKQVREHLAEIEADSNKASAGEQHAPLDCASRAEA
Specific function: Activates the 7th to 12th amino acids (Val, D-Val, Trp, D-Leu, Xaa and D-Leu) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 8th (D-Val), the 10th (D- Leu) an
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 6 acyl carrier domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010071 - InterPro: IPR009081 - InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR023213 - InterPro: IPR001242 - InterPro: IPR010060 - InterPro: IPR006163 - InterPro: IPR020806 - InterPro: IPR006162 [H]
Pfam domain/function: PF00501 AMP-binding; PF00668 Condensation; PF00550 PP-binding [H]
EC number: NA
Molecular weight: Translated: 85499; Mature: 85499
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGITLNLVPDYEIDAGYALFPATACQTRFWHEQKASPKASALNSAFRLQLSGPLKAASI CCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHHCCEEEEEECCCCCHHHH EQVLCELVARHEILRTGFQMTGAGLRQQVASRVPFKLDVVDLTGFEEKAALAEAERVGRL HHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCC QASTPFDLSSPSFFRAVWLPRSPTQGELQLTFHSLVIDGWSFAILVCELVEGLAALHAGH CCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHCCC DPQFADVELHHGDYALWKEEFVASGALDRARAHWRQELRDFRRFEVPGDRPRPQQRRFQG CCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH VIRSILLPGALGDRLSAAAKAQGVTLFSVAAAGLAMALQTATGQSRVAMGTQMSVRDQQE HHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHH LEGVIGPLINTVILRLDVPHGSTLAAVTAQCGAKLSDAIEHLHLSFEEMIELAGEVADPD HHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCCC RPPLCPVNFALQQSFVGVGDEVRRQDFSATTSPSYNAGALYDLNFFMVRRPEGWRISCEG CCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEECC DTDLYDVETIDGHLAKWREMLETVDSEAQRPLALPAGGEAAKFVTGVGASGFMSQAELAA CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHCCCCCHHHHHHHHHHH KARNIVRYNENAPGTPVIALNNTGVLFGLAQQIGSDRPLIDIPMVPEGPPREFPPRAFED HHHHHEEECCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHH IAADAVRLIRLAQPKGPYILMGLCVLGALSLEAAHQLRREGESVELVILNDSWCPGYREM HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH MPWYDRELRKMQVRADNIPRDFRKAVRGETSMVSFLKQYRIVRRLGIADLALKLGLIKDK CCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC AADHTIAENRWYMEYLLAQQARYRPAPYDGNVQIFRSDQVLKGRLFAWDLGWQRVLTGKQ CCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCHHHHHCCCC VVTPVPGMHDQMFRAAGAAVIGKQVREHLAEIEADSNKASAGEQHAPLDCASRAEA EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCC >Mature Secondary Structure MNGITLNLVPDYEIDAGYALFPATACQTRFWHEQKASPKASALNSAFRLQLSGPLKAASI CCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHHCCEEEEEECCCCCHHHH EQVLCELVARHEILRTGFQMTGAGLRQQVASRVPFKLDVVDLTGFEEKAALAEAERVGRL HHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCC QASTPFDLSSPSFFRAVWLPRSPTQGELQLTFHSLVIDGWSFAILVCELVEGLAALHAGH CCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHCCC DPQFADVELHHGDYALWKEEFVASGALDRARAHWRQELRDFRRFEVPGDRPRPQQRRFQG CCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH VIRSILLPGALGDRLSAAAKAQGVTLFSVAAAGLAMALQTATGQSRVAMGTQMSVRDQQE HHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHH LEGVIGPLINTVILRLDVPHGSTLAAVTAQCGAKLSDAIEHLHLSFEEMIELAGEVADPD HHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCCC RPPLCPVNFALQQSFVGVGDEVRRQDFSATTSPSYNAGALYDLNFFMVRRPEGWRISCEG CCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEECC DTDLYDVETIDGHLAKWREMLETVDSEAQRPLALPAGGEAAKFVTGVGASGFMSQAELAA CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHCCCCCHHHHHHHHHHH KARNIVRYNENAPGTPVIALNNTGVLFGLAQQIGSDRPLIDIPMVPEGPPREFPPRAFED HHHHHEEECCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHH IAADAVRLIRLAQPKGPYILMGLCVLGALSLEAAHQLRREGESVELVILNDSWCPGYREM HHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH MPWYDRELRKMQVRADNIPRDFRKAVRGETSMVSFLKQYRIVRRLGIADLALKLGLIKDK CCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC AADHTIAENRWYMEYLLAQQARYRPAPYDGNVQIFRSDQVLKGRLFAWDLGWQRVLTGKQ CCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCHHHHHCCCC VVTPVPGMHDQMFRAAGAAVIGKQVREHLAEIEADSNKASAGEQHAPLDCASRAEA EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA