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The map label for this gene is yfdE [H]

Identifier: 186476372

GI number: 186476372

Start: 1834768

End: 1835988

Strand: Direct

Name: yfdE [H]

Synonym: Bphy_1614

Alternate gene names: 186476372

Gene position: 1834768-1835988 (Clockwise)

Preceding gene: 186476370

Following gene: 186476375

Centisome position: 52.74

GC content: 66.18

Gene sequence:

>1221_bases
ATGGGCGCACTCAGTCATATCCGCGTACTGGATCTCACCCGCGTGCTCGCCGGCCCGTGGTGCGCGCAAACGCTCGCCGA
TTTCGGCGCCGACGTGATCAAGGTCGAGCGGCCGGGCGCCGGTGACGACACGCGCCACTGGGGGCCGCCGTACCTGAAGA
CGCCGGACGGCGCGGACACGCGCGAGGCCGCCTACTATCTCGCGGCAAACCGCAACAAGCGCTCGGTGACCGTCGACATC
GCAACGCCCGAGGGGCAGCAGATCGTGCGCGAGCTGGCCGCGCAAAGCGACGTCGTGCTGGAAAACTACAAGGTCGGCCA
GTTGAAGAAGTACGGGCTCGACTACGATTCGCTGAAGGCCGTGAAGCCCGACATCGTCTACTGCTCGGTGACGGGCTTCG
GGCAAACGGGACCGTACGCGCAGCGCGCGGGCTACGACTTCATCATCCAGGGCATGGGCGGCTTCATGAGCATCACGGGC
GAGCGCGACGACCTGCCCGGCGGCGGTCCGCAAAAAGCGGGGGTCGCGATCGCCGACCTGATGACGGGCATGTACTCGTC
GGTAGCCGTGCTGACGGCGCTTGCGCACCGCGACCGGACGGGCGAAGGCCAGTACATAGACATGGCGCTCCTCGACGTGC
AGGTCGCGATGCTCGCCAACATGAATTCGAATTTCCTTGCGAGCGGCAAGCCGCCCGTGCGCTGGGGCAATGCGCACGCG
AACATCGTCCCCTATCAGACGTTCCAGACCAGCGACAGCTGGATCATCGTCGCCGTCGGCAATGACGGGCAGTTCCGTAA
GTTCGTCGAAGCGGGAAACCGGGCAGATCTCGCCGACGACGACCGTTTCGCCACCAACCCTGCACGCGTGCGCAATCGCG
AGATGCTCGTCCCGATCCTCGCGGAGATGGTCCGCACGCGCAGCAAGCACGAATGGATCGATGCGCTCGAAGCCGCGGGC
GTACCGTGTGGCCCGATCAACGATCTCGAAGAGGTGTTCGAGAACGAGCAGGTGGTCGCGCGCGGCATGCAGGTGCAGTT
GCCGCATCCGTCGGGCGGCACGGTCAAGCTGGTGCGCAATCCCATTCGGATGAGCGCGACCCCGCCCGAAGCGCAGGCGC
ATCCACCCACGCTCGGCGAACACACGGAAGCGGTGTTGCGCGACGTGCTCGGTTATGGCGACGAGCAGATCGACGCGCTG
CGGGGCCGGTCGGTGATCTGA

Upstream 100 bases:

>100_bases
TAGGCCGACGGCAGCCGATCGCTTAAGATGCATCACATCGATCGACTCGGGCAGCGCCTGTGCGGCGCGTGCCCCATCAC
ACTGGAGACATAGACAAAAT

Downstream 100 bases:

>100_bases
CGGGTAGCGCGCACGGGCGTGCCCCGGCGAGCGCAGGCCGCGGCCCGCCTCGAGACGTCGGCCCGGCCGGCTGGGTAAGT
CAGATCACCCGGGACGCGAG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDI
ATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLKAVKPDIVYCSVTGFGQTGPYAQRAGYDFIIQGMGGFMSITG
ERDDLPGGGPQKAGVAIADLMTGMYSSVAVLTALAHRDRTGEGQYIDMALLDVQVAMLANMNSNFLASGKPPVRWGNAHA
NIVPYQTFQTSDSWIIVAVGNDGQFRKFVEAGNRADLADDDRFATNPARVRNREMLVPILAEMVRTRSKHEWIDALEAAG
VPCGPINDLEEVFENEQVVARGMQVQLPHPSGGTVKLVRNPIRMSATPPEAQAHPPTLGEHTEAVLRDVLGYGDEQIDAL
RGRSVI

Sequences:

>Translated_406_residues
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDI
ATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLKAVKPDIVYCSVTGFGQTGPYAQRAGYDFIIQGMGGFMSITG
ERDDLPGGGPQKAGVAIADLMTGMYSSVAVLTALAHRDRTGEGQYIDMALLDVQVAMLANMNSNFLASGKPPVRWGNAHA
NIVPYQTFQTSDSWIIVAVGNDGQFRKFVEAGNRADLADDDRFATNPARVRNREMLVPILAEMVRTRSKHEWIDALEAAG
VPCGPINDLEEVFENEQVVARGMQVQLPHPSGGTVKLVRNPIRMSATPPEAQAHPPTLGEHTEAVLRDVLGYGDEQIDAL
RGRSVI
>Mature_405_residues
GALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKTPDGADTREAAYYLAANRNKRSVTVDIA
TPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLKAVKPDIVYCSVTGFGQTGPYAQRAGYDFIIQGMGGFMSITGE
RDDLPGGGPQKAGVAIADLMTGMYSSVAVLTALAHRDRTGEGQYIDMALLDVQVAMLANMNSNFLASGKPPVRWGNAHAN
IVPYQTFQTSDSWIIVAVGNDGQFRKFVEAGNRADLADDDRFATNPARVRNREMLVPILAEMVRTRSKHEWIDALEAAGV
PCGPINDLEEVFENEQVVARGMQVQLPHPSGGTVKLVRNPIRMSATPPEAQAHPPTLGEHTEAVLRDVLGYGDEQIDALR
GRSVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=43.424317617866, Blast_Score=360, Evalue=2e-99,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=40.7925407925408, Blast_Score=346, Evalue=2e-95,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=38.4615384615385, Blast_Score=302, Evalue=3e-82,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=37.0629370629371, Blast_Score=295, Evalue=6e-80,
Organism=Homo sapiens, GI42794625, Length=417, Percent_Identity=25.8992805755396, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI266456254, Length=417, Percent_Identity=25.8992805755396, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI266458397, Length=277, Percent_Identity=28.8808664259928, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI266458393, Length=277, Percent_Identity=28.8808664259928, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI266458395, Length=163, Percent_Identity=31.9018404907975, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI42822893, Length=163, Percent_Identity=31.9018404907975, Blast_Score=96, Evalue=6e-20,
Organism=Escherichia coli, GI87082093, Length=388, Percent_Identity=33.2474226804124, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1788717, Length=428, Percent_Identity=30.3738317757009, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1786222, Length=416, Percent_Identity=22.5961538461538, Blast_Score=82, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=25.2199413489736, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=356, Percent_Identity=24.438202247191, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=45.6575682382134, Blast_Score=362, Evalue=1e-100,
Organism=Drosophila melanogaster, GI24585488, Length=348, Percent_Identity=26.7241379310345, Blast_Score=119, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44085; Mature: 43954

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKTPDGADT
CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
REAAYYLAANRNKRSVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLKA
HHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHC
VKPDIVYCSVTGFGQTGPYAQRAGYDFIIQGMGGFMSITGERDDLPGGGPQKAGVAIADL
CCCCEEEEEEECCCCCCCHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHH
MTGMYSSVAVLTALAHRDRTGEGQYIDMALLDVQVAMLANMNSNFLASGKPPVRWGNAHA
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCC
NIVPYQTFQTSDSWIIVAVGNDGQFRKFVEAGNRADLADDDRFATNPARVRNREMLVPIL
CEEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHH
AEMVRTRSKHEWIDALEAAGVPCGPINDLEEVFENEQVVARGMQVQLPHPSGGTVKLVRN
HHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHCCCEEEECCCCCCEEEEEEC
PIRMSATPPEAQAHPPTLGEHTEAVLRDVLGYGDEQIDALRGRSVI
CEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
GALSHIRVLDLTRVLAGPWCAQTLADFGADVIKVERPGAGDDTRHWGPPYLKTPDGADT
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
REAAYYLAANRNKRSVTVDIATPEGQQIVRELAAQSDVVLENYKVGQLKKYGLDYDSLKA
HHHEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHC
VKPDIVYCSVTGFGQTGPYAQRAGYDFIIQGMGGFMSITGERDDLPGGGPQKAGVAIADL
CCCCEEEEEEECCCCCCCHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHH
MTGMYSSVAVLTALAHRDRTGEGQYIDMALLDVQVAMLANMNSNFLASGKPPVRWGNAHA
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCC
NIVPYQTFQTSDSWIIVAVGNDGQFRKFVEAGNRADLADDDRFATNPARVRNREMLVPIL
CEEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHH
AEMVRTRSKHEWIDALEAAGVPCGPINDLEEVFENEQVVARGMQVQLPHPSGGTVKLVRN
HHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHCCCEEEECCCCCCEEEEEEC
PIRMSATPPEAQAHPPTLGEHTEAVLRDVLGYGDEQIDALRGRSVI
CEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]