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The map label for this gene is rbn [C]

Identifier: 186476333

GI number: 186476333

Start: 1784661

End: 1785980

Strand: Reverse

Name: rbn [C]

Synonym: Bphy_1575

Alternate gene names: 186476333

Gene position: 1785980-1784661 (Counterclockwise)

Preceding gene: 186476338

Following gene: 186476329

Centisome position: 51.33

GC content: 63.94

Gene sequence:

>1320_bases
TTGTTGTCCAGGTTGCGTCTCGATCTCGACACGCTCAAGCGGCTCGCGGAGTTCGCCGCGAAGCGCAGCGGCGAGGATCG
CATTCCGCAGGTGGCGGGCAGTCTCACGTTCACGACGATGCTGTCGCTGGTGCCGCTCGCGACAGTCGCGTTCGCGCTCT
TTACCGCGTTTCCGATCTTTGCCCAGTTCCAGGTGTCGCTGCAGACTTTTCTCGCCGAGCATCTGATGCCCGACCAGGTC
AGCAGCCAGATCTTCCGATATCTGAACCAGTTCGCATCGAAGGCGAAGGGGCTGACCACGCTCGGCATGATCATTCTGTT
CGTCACGTCGGTCATGACGATGATGACAGTCGAATCGGCGTTCAACGTGATCTGGCGGGTGCGCAAGGCGCGGCCTTTCG
CGCAGCGCGTGCTGGCCTACTGGGCGATCCTGACGCTCGGTCCTATCCTGATCGGCGTTAGTCTGTCGATCTCTTCCTAC
CTGTTCACGCAGTCGATGACCTACACGGCCGCGCAGCGCATCACGCCGCTGATCGAATGGGCGCTCGCGGGCGCGACGCT
GCCGTTGACGGTGCTCGCGTTCACGATGCTCTATGTGTTTCTGCCGAACTGCCGGGTGGAATGGCGCGACGCCATCGTCG
GCGGCGTGACGGCCGCGATCGCGTTCGAACTGGCCAAGCGCGGCTTCGGCTTTTATATCCGGCGCATTCCGACGTATACG
GCCGTGTACGGCGCGTTCGCCGTGGTGCCGCTCTTCCTGCTGTGGATGTACCTGAGCTGGTTCATCACGCTGGCAGGCGC
GATGATCGCGTCGGCGCTGCCCGCTATCCGCACGGGCCAATTCCACCGTCCGGACTTTCCGGGCAGCGATCTGCTCGACT
CGCTCGAACTGCTCGCACGCCTCGTCGAAGCGCGCGAAGCGGGCACGCATGGCTACACGGTGCCGGAACTCGCCCGCGCG
TTGCGCCGCGATATGGAAACGACGGTGCGCCTGTTGCAGCAGCTTGAAGGGATCGACTGGATCGTGCAGCTCGACGAAAA
CGGCCACCGTCCGCGTTTTCTGCTGGTCGCGAACCCGAACCAGATCACCGTCGAGCGGCTCTTCGATCTGTTCGTTGTCG
ACCGGGCGGAACTGGCGTATCAGCTGAATCTGGACTCGACGCGCGTGGATAGCGCGACATTGCTTGGCGCGCTCGATAAC
GAAGGTCTCAAAGTGAGCCTTGCGAACCTGCTGGCGGCGCGTGCCGTTGCGCGTGGCGCCGCGCAGCAGAGCCCCGGAGG
CATGGACGGGGCGGCGGCCTTGCCGCGCCAGACGGCATGA

Upstream 100 bases:

>100_bases
CGATGGGCAGTCCGTGAATTCGCCCGATGCCGCGCCCCGCGAGATTGCTGCCCGGCATAGACCATATCGAAGCGCGTGCA
CTGAAGTGGAGGAGGTCGGT

Downstream 100 bases:

>100_bases
GCGCGGCTTGAGCGTTTTGCGGGGCGGCGACGCCGATGCGCACTAAAGCGAAATGCGCCCCGTGCAGATGTCCTTGAACA
TCACCCAGTCGCCCATCAGG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MLSRLRLDLDTLKRLAEFAAKRSGEDRIPQVAGSLTFTTMLSLVPLATVAFALFTAFPIFAQFQVSLQTFLAEHLMPDQV
SSQIFRYLNQFASKAKGLTTLGMIILFVTSVMTMMTVESAFNVIWRVRKARPFAQRVLAYWAILTLGPILIGVSLSISSY
LFTQSMTYTAAQRITPLIEWALAGATLPLTVLAFTMLYVFLPNCRVEWRDAIVGGVTAAIAFELAKRGFGFYIRRIPTYT
AVYGAFAVVPLFLLWMYLSWFITLAGAMIASALPAIRTGQFHRPDFPGSDLLDSLELLARLVEAREAGTHGYTVPELARA
LRRDMETTVRLLQQLEGIDWIVQLDENGHRPRFLLVANPNQITVERLFDLFVVDRAELAYQLNLDSTRVDSATLLGALDN
EGLKVSLANLLAARAVARGAAQQSPGGMDGAAALPRQTA

Sequences:

>Translated_439_residues
MLSRLRLDLDTLKRLAEFAAKRSGEDRIPQVAGSLTFTTMLSLVPLATVAFALFTAFPIFAQFQVSLQTFLAEHLMPDQV
SSQIFRYLNQFASKAKGLTTLGMIILFVTSVMTMMTVESAFNVIWRVRKARPFAQRVLAYWAILTLGPILIGVSLSISSY
LFTQSMTYTAAQRITPLIEWALAGATLPLTVLAFTMLYVFLPNCRVEWRDAIVGGVTAAIAFELAKRGFGFYIRRIPTYT
AVYGAFAVVPLFLLWMYLSWFITLAGAMIASALPAIRTGQFHRPDFPGSDLLDSLELLARLVEAREAGTHGYTVPELARA
LRRDMETTVRLLQQLEGIDWIVQLDENGHRPRFLLVANPNQITVERLFDLFVVDRAELAYQLNLDSTRVDSATLLGALDN
EGLKVSLANLLAARAVARGAAQQSPGGMDGAAALPRQTA
>Mature_439_residues
MLSRLRLDLDTLKRLAEFAAKRSGEDRIPQVAGSLTFTTMLSLVPLATVAFALFTAFPIFAQFQVSLQTFLAEHLMPDQV
SSQIFRYLNQFASKAKGLTTLGMIILFVTSVMTMMTVESAFNVIWRVRKARPFAQRVLAYWAILTLGPILIGVSLSISSY
LFTQSMTYTAAQRITPLIEWALAGATLPLTVLAFTMLYVFLPNCRVEWRDAIVGGVTAAIAFELAKRGFGFYIRRIPTYT
AVYGAFAVVPLFLLWMYLSWFITLAGAMIASALPAIRTGQFHRPDFPGSDLLDSLELLARLVEAREAGTHGYTVPELARA
LRRDMETTVRLLQQLEGIDWIVQLDENGHRPRFLLVANPNQITVERLFDLFVVDRAELAYQLNLDSTRVDSATLLGALDN
EGLKVSLANLLAARAVARGAAQQSPGGMDGAAALPRQTA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=257, Percent_Identity=40.4669260700389, Blast_Score=192, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48536; Mature: 48536

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRLRLDLDTLKRLAEFAAKRSGEDRIPQVAGSLTFTTMLSLVPLATVAFALFTAFPIF
CCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFQVSLQTFLAEHLMPDQVSSQIFRYLNQFASKAKGLTTLGMIILFVTSVMTMMTVESA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
FNVIWRVRKARPFAQRVLAYWAILTLGPILIGVSLSISSYLFTQSMTYTAAQRITPLIEW
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAGATLPLTVLAFTMLYVFLPNCRVEWRDAIVGGVTAAIAFELAKRGFGFYIRRIPTYT
HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AVYGAFAVVPLFLLWMYLSWFITLAGAMIASALPAIRTGQFHRPDFPGSDLLDSLELLAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHH
LVEAREAGTHGYTVPELARALRRDMETTVRLLQQLEGIDWIVQLDENGHRPRFLLVANPN
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCC
QITVERLFDLFVVDRAELAYQLNLDSTRVDSATLLGALDNEGLKVSLANLLAARAVARGA
CHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHCC
AQQSPGGMDGAAALPRQTA
CCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA