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The map label for this gene is yoaB [C]

Identifier: 186476318

GI number: 186476318

Start: 1769091

End: 1769444

Strand: Reverse

Name: yoaB [C]

Synonym: Bphy_1560

Alternate gene names: 186476318

Gene position: 1769444-1769091 (Counterclockwise)

Preceding gene: 186476319

Following gene: 186476317

Centisome position: 50.86

GC content: 60.17

Gene sequence:

>354_bases
ATGGCAGTCATTCGTCATCACGTCGGCAAGCGCCTTTCGGAAACCGCCGTTCACAACGGTACGGTGTATCTGGCTGGCCA
GATCGCCGAAGACACCGACCAGGACATCGTCGGTCAAACGCGCGAAGTGCTCGGCCACATCGACCGGCTGCTCGGTGAAG
TCAATAGCGACAAGGCGCATTTGCTGTCGGTGCAGATTTATATCTCGGACATGGTGCACTTTGCCGGCATGAACGCCGTG
TGGGATGAATGGGTCGCACAAGGCAACACGCCGCCGCGCGCAACCGTCGAAGCGAAGCTCGCCAATCCCAAGTGCCTCGT
CGAAGTGGTGGTCGTCGCCGCCCAGCGCAGCTAA

Upstream 100 bases:

>100_bases
GAGATTGGCGCGGCGACGTTGACCGGTCTCGACCGAGCGGTTTTACGCATCGCGCATCGCGTGCGTCGCCGTCTTTCATT
TTCAACGGACAGGACATTTC

Downstream 100 bases:

>100_bases
TCACGAATCGCTTCAAGCATCAGACTGACCCGTCCGCGCATGCCGCGGCCGCCGCATCATGAACACCGACATCGCCACGA
CCGCTACCAATCCGACGCCT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MAVIRHHVGKRLSETAVHNGTVYLAGQIAEDTDQDIVGQTREVLGHIDRLLGEVNSDKAHLLSVQIYISDMVHFAGMNAV
WDEWVAQGNTPPRATVEAKLANPKCLVEVVVVAAQRS

Sequences:

>Translated_117_residues
MAVIRHHVGKRLSETAVHNGTVYLAGQIAEDTDQDIVGQTREVLGHIDRLLGEVNSDKAHLLSVQIYISDMVHFAGMNAV
WDEWVAQGNTPPRATVEAKLANPKCLVEVVVVAAQRS
>Mature_116_residues
AVIRHHVGKRLSETAVHNGTVYLAGQIAEDTDQDIVGQTREVLGHIDRLLGEVNSDKAHLLSVQIYISDMVHFAGMNAVW
DEWVAQGNTPPRATVEAKLANPKCLVEVVVVAAQRS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=40.3508771929825, Blast_Score=92, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12779; Mature: 12648

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIRHHVGKRLSETAVHNGTVYLAGQIAEDTDQDIVGQTREVLGHIDRLLGEVNSDKAH
CCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
LLSVQIYISDMVHFAGMNAVWDEWVAQGNTPPRATVEAKLANPKCLVEVVVVAAQRS
EEEEHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVIRHHVGKRLSETAVHNGTVYLAGQIAEDTDQDIVGQTREVLGHIDRLLGEVNSDKAH
CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
LLSVQIYISDMVHFAGMNAVWDEWVAQGNTPPRATVEAKLANPKCLVEVVVVAAQRS
EEEEHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA