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The map label for this gene is ihfA [H]

Identifier: 186476310

GI number: 186476310

Start: 1758808

End: 1759161

Strand: Reverse

Name: ihfA [H]

Synonym: Bphy_1552

Alternate gene names: 186476310

Gene position: 1759161-1758808 (Counterclockwise)

Preceding gene: 186476311

Following gene: 186476309

Centisome position: 50.56

GC content: 61.58

Gene sequence:

>354_bases
ATGATCCGCGATATTCCTACCTCGACCTCCAGCGCGTCGGCGGAAGCACCGACGCTCACCAAGGCGGAGCTTGCCGAGCT
GCTGTTCGACAATGTCGGGCTCAACAAGCGGGAAGCGAAGGACATGGTCGAAGCGTTCTTCGAAGTGATTCGCGACGCGC
TGGAGAGCGGCGACAGCGTCAAGCTGTCCGGCTTCGGCAACTTCCAGTTGCGCGACAAGCCGCAGCGTCCTGGCAGAAAT
CCGAAAACGGGCGAGGCGATTCCCATCGCTGCTCGCCGCGTCGTGACGTTTCACGCAAGTCAAAAGCTGAAGGCGCTGGT
CGAGAACGGCGCTGAAGAGAGCTTCGCGCGCTGA

Upstream 100 bases:

>100_bases
TGTTCCGCAAGTTCCGTTCTGGTTGACGCGCCATTTGACAGATATGAATGAAATGAACTCGAGTGATTTCGAAGCCCTTC
TTTCGGCGCAACGTAGCGCC

Downstream 100 bases:

>100_bases
TCGATTCGCGCGCCCGCGCAACTACTACGACGGTCAACCGACCGCTAACTGACGATGACAGCGACGATCGAAAAAGTCGT
CTTGCCTCCGATTCCCGCGA

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MIRDIPTSTSSASAEAPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQRPGRN
PKTGEAIPIAARRVVTFHASQKLKALVENGAEESFAR

Sequences:

>Translated_117_residues
MIRDIPTSTSSASAEAPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQRPGRN
PKTGEAIPIAARRVVTFHASQKLKALVENGAEESFAR
>Mature_117_residues
MIRDIPTSTSSASAEAPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQRPGRN
PKTGEAIPIAARRVVTFHASQKLKALVENGAEESFAR

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=93, Percent_Identity=72.0430107526882, Blast_Score=138, Evalue=1e-34,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=36.6666666666667, Blast_Score=67, Evalue=4e-13,
Organism=Escherichia coli, GI1786644, Length=86, Percent_Identity=34.8837209302326, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12775; Mature: 12775

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRDIPTSTSSASAEAPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
KLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEESFAR
EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIRDIPTSTSSASAEAPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
KLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEESFAR
EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA