| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is yoaA [H]
Identifier: 186476161
GI number: 186476161
Start: 1578477
End: 1580750
Strand: Reverse
Name: yoaA [H]
Synonym: Bphy_1403
Alternate gene names: 186476161
Gene position: 1580750-1578477 (Counterclockwise)
Preceding gene: 186476162
Following gene: 186476159
Centisome position: 45.43
GC content: 65.0
Gene sequence:
>2274_bases TTGAACTCACCGCTTCAATCTTCTTCCCGGACGGCGTCGGACGATGACGCATCGGGTGCCGCGTCGCCGGCTTCCGCCGA GCGTGCCACCAAAGGCGCGTTGGGCGGCGGCGCGCTGGCCGCGTCACTGACTCACAAGCGGTCGTCGGAACTCGCCGACA TCTTCGCCGCTGATGGGCTGCTCGCGCGTCAGATCGACGGCTACCGGCCGCGTGCCTCGCAGATCGAGATGGCACGCGCC GTCGCGGCCGCGATGGAAGCCTCGGGCCGCGCGATGCCCGAGCCCGCGATGTTCGAAGCACAGAAGCGGCCGGCGCGGCG TTTGCAACACACGTCGTCGGCGTCGGCAACGGATGCGCCGGCGGACCAGGCATCGTCTCCGGAAGGCGCTCTGGAAGGCG GCGAAAACACGCTGATCGTCGAAGCCGGGACGGGCACGGGCAAGACGTATGCGTATCTCGTGCCCGCCATGCTATGGGGC GGCAAGGTCATCGTCTCGACGGGCACGAAGCACCTGCAGGATCAGCTTTTTCTTCGCGATATTCCGACTGTGCGCGACGC GCTTGCCGTCCCTGTGTCGGTTGCGATGCTCAAGGGCCGTGCGAACTATTTGTGCCACTACTACCTGCAACGCACGGCGG ACAACGGCCGCTTGCCGTCGCGGCAGGAGACGTCGTATCTGCAGGACATCATCCGCTTCGCGAAGATCACGCGCACAGGT GACAAGGCCGAGCTCGCGAGCGTGCCGGAGACGGCTGCCGTGTGGTCGATGGTGACATCGACGCGCGACAACTGCCTCGG TCAGGAATGTCCGCACTATAAGGACTGTTTCGTGATGCAGGCGCGCCGCGAAGCGCAGCAGGCCGATATCGTCGTCGTGA ATCACCATCTGTTTTTCGCCGACATCATGTTGCGTGATACGGGCATGGCCGAACTGCTGCCGACGGCGAACACGGTCATC TTCGACGAAGCGCATCAGCTGCCCGAAACCGCGACGCTGTTTTTCGGCGAGACGCTGTCGACCACGCAGTTTCTCGAACT CGCGCGCGACTCGGTGGCCGAAGGTCTCGGTCACGCACGCGACGCCGTCGACTGGGTGAAGCTCGGGGCGGCGCTGGAGC GCTCCGCGCGCGACGTGCGGCTCGCGTTCAAGGAAGATTCCGTGCGCCTGTCGATCGGACAGTTGCCCGACGATCATCCG CTATTCCCCGCGCTCGAAGCTGTCGAAACCGAACTCGATGCACTCGCCAGCGCGCTCGCCGGGCAGTCGGAACGGGCGGA GTCGCTGGGGGCGCTGCTGCGCCGTGCGCGCGAGTTGCAGGAGGTGCTGGCCGGCTGGACCGCGCCGCCGACGGAAGCGG AACGTGACGCGGCATCCGATGCCGGAGCGGCACCAGAGAAAAGCGATCCAAACGAGAAGGTGCGCTGGATAGAAGTGTTC TCGCATACCGTTCAACTGCATGAAACGCCGTTGTCGGTCGCCCCTATTTTCGCGAAGCAGCGCGCGGGCGTGCCGCGCGC ATGGGTCTTCACGTCGGCGACGCTGTCCGTGCGCGGCGACTTCACGCACTACGCAGCGCAGATGGGCCTCAATTCGCGCC GCTCGATGACGCTGCCCAGTCCCTTCGATTACGGTACGCAGGGCTTGCTTTACGTGCCGCGCAATCTGCCGCAGCCGTCG TCGCCGATGTTCACCGACGCCGTGTTCGATGCCGCGCTGCCTGCCATCGAAGCGTCGGGTGGCGGGGTGTTCATGCTCTG TACGACGCTGCGCGCCGTCGATCGCATTGCATCGAAATTGCGCGACGTGATCGAGTCGCGTGGCTGGAACATGCCGCTGC TCGTGCAGGGCGATGCAAGCCGCACTGAACTGCTTGATCGTTTTCGCTCGTATGGCAATGCGATCCTCGTGGGCAGCCAG AGCTTCTGGGAAGGTGTGGACGTGCGCGGCGATGCGTTGTCGCTCGTCGTGATCGACAAGCTGCCATTCGCGCCGCCAGA CGACCCCGTGCTATCCGCGCGCCTCGATGCGCTGACGAAGAAAGGTTTGAGTCCGTTTGCCGTGCATCAGCTGCCGCAGG CGGTGATTACCCTTAAGCAGGGCGCAGGGCGTCTGATCCGCTCGGAGACCGATCGCGGCGTGCTGATGATCTGCGACACG CGCCTCGTGGACAAGCCGTATGGACGCCGTATATGGCAGAGCCTGCCGCCGTTCAAGCGCACGCGCGAGATGGACGTCGT GCGCGAGTTTTTCGAAGAGCGGGGGCAGGCTTAA
Upstream 100 bases:
>100_bases ACTGCAGCTTGAACCGGAAGCACGCAACTGACAGCGCGGCCAGGCAGGCGCCGGACCCGTTCAGTGTGTGGTGCGCCGGA CTTTGCAGGAATCGCTTGCC
Downstream 100 bases:
>100_bases GAAGGCCGCACCCGTTGCCATCCATGCATGATGTTTGCCGGTGCAACGGGTCATTCATCGCGCTTCAGATACATTGCGAA GTGTCGCGGCTCGACGACAA
Product: helicase c2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 757; Mature: 757
Protein sequence:
>757_residues MNSPLQSSSRTASDDDASGAASPASAERATKGALGGGALAASLTHKRSSELADIFAADGLLARQIDGYRPRASQIEMARA VAAAMEASGRAMPEPAMFEAQKRPARRLQHTSSASATDAPADQASSPEGALEGGENTLIVEAGTGTGKTYAYLVPAMLWG GKVIVSTGTKHLQDQLFLRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIIRFAKITRTG DKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTVI FDEAHQLPETATLFFGETLSTTQFLELARDSVAEGLGHARDAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPDDHP LFPALEAVETELDALASALAGQSERAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDPNEKVRWIEVF SHTVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLNSRRSMTLPSPFDYGTQGLLYVPRNLPQPS SPMFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNMPLLVQGDASRTELLDRFRSYGNAILVGSQ SFWEGVDVRGDALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSETDRGVLMICDT RLVDKPYGRRIWQSLPPFKRTREMDVVREFFEERGQA
Sequences:
>Translated_757_residues MNSPLQSSSRTASDDDASGAASPASAERATKGALGGGALAASLTHKRSSELADIFAADGLLARQIDGYRPRASQIEMARA VAAAMEASGRAMPEPAMFEAQKRPARRLQHTSSASATDAPADQASSPEGALEGGENTLIVEAGTGTGKTYAYLVPAMLWG GKVIVSTGTKHLQDQLFLRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIIRFAKITRTG DKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTVI FDEAHQLPETATLFFGETLSTTQFLELARDSVAEGLGHARDAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPDDHP LFPALEAVETELDALASALAGQSERAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDPNEKVRWIEVF SHTVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLNSRRSMTLPSPFDYGTQGLLYVPRNLPQPS SPMFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNMPLLVQGDASRTELLDRFRSYGNAILVGSQ SFWEGVDVRGDALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSETDRGVLMICDT RLVDKPYGRRIWQSLPPFKRTREMDVVREFFEERGQA >Mature_757_residues MNSPLQSSSRTASDDDASGAASPASAERATKGALGGGALAASLTHKRSSELADIFAADGLLARQIDGYRPRASQIEMARA VAAAMEASGRAMPEPAMFEAQKRPARRLQHTSSASATDAPADQASSPEGALEGGENTLIVEAGTGTGKTYAYLVPAMLWG GKVIVSTGTKHLQDQLFLRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIIRFAKITRTG DKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPTANTVI FDEAHQLPETATLFFGETLSTTQFLELARDSVAEGLGHARDAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPDDHP LFPALEAVETELDALASALAGQSERAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDPNEKVRWIEVF SHTVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLNSRRSMTLPSPFDYGTQGLLYVPRNLPQPS SPMFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNMPLLVQGDASRTELLDRFRSYGNAILVGSQ SFWEGVDVRGDALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSETDRGVLMICDT RLVDKPYGRRIWQSLPPFKRTREMDVVREFFEERGQA
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=698, Percent_Identity=42.4068767908309, Blast_Score=501, Evalue=1e-143, Organism=Escherichia coli, GI1787018, Length=667, Percent_Identity=27.5862068965517, Blast_Score=174, Evalue=3e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR006935 [H]
Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 82210; Mature: 82210
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSPLQSSSRTASDDDASGAASPASAERATKGALGGGALAASLTHKRSSELADIFAADGL CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCH LARQIDGYRPRASQIEMARAVAAAMEASGRAMPEPAMFEAQKRPARRLQHTSSASATDAP HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC ADQASSPEGALEGGENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFLRD CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHC IPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIIRFAKITRTG CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC DKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFA CHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEH DIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGETLSTTQFLELARDSVAEGLGHAR HHHHHCCCHHHHCCCCCEEEEHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH DAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPDDHPLFPALEAVETELDALASALA HHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC GQSERAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDPNEKVRWIEVF CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH SHTVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLNSRRSMTLPS HHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCC PFDYGTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKL CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHH RDVIESRGWNMPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDVRGDALSLVVIDK HHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCEEEEECHHHHCCCCCCCCEEEEEEEEC LPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSETDRGVLMICDT CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECC RLVDKPYGRRIWQSLPPFKRTREMDVVREFFEERGQA HHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNSPLQSSSRTASDDDASGAASPASAERATKGALGGGALAASLTHKRSSELADIFAADGL CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCH LARQIDGYRPRASQIEMARAVAAAMEASGRAMPEPAMFEAQKRPARRLQHTSSASATDAP HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC ADQASSPEGALEGGENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFLRD CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHC IPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIIRFAKITRTG CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC DKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADIVVVNHHLFFA CHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEH DIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGETLSTTQFLELARDSVAEGLGHAR HHHHHCCCHHHHCCCCCEEEEHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH DAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPDDHPLFPALEAVETELDALASALA HHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC GQSERAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDPNEKVRWIEVF CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH SHTVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLNSRRSMTLPS HHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCC PFDYGTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKL CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHH RDVIESRGWNMPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDVRGDALSLVVIDK HHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCEEEEECHHHHCCCCCCCCEEEEEEEEC LPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSETDRGVLMICDT CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECC RLVDKPYGRRIWQSLPPFKRTREMDVVREFFEERGQA HHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]