| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is map [H]
Identifier: 186476097
GI number: 186476097
Start: 1498842
End: 1499654
Strand: Direct
Name: map [H]
Synonym: Bphy_1339
Alternate gene names: 186476097
Gene position: 1498842-1499654 (Clockwise)
Preceding gene: 186476080
Following gene: 186476098
Centisome position: 43.08
GC content: 63.47
Gene sequence:
>813_bases ATGGCTATTACGCTCAAAAACGAAGACGATATCGCGCAGATGCGCATCGCCGGACGGCTCGCGAGCGAGGTGCTCGACTA CATCACGCCGTTCGTCAAGCCCGGCGTCACGACGGGCGAACTCGACCGTCTTTGCCACGAATACATGACGAACGTGCAAG GCACGGTTCCCGCGCCGCTGAATTACCAGCCGCCCGGCTATCCGCCTTTCCCGAAGGCCGTCTGCACGTCCGTCAACGAC GTGATCTGCCACGGCATCCCCGGCGACAAGGCGCTGAAGAACGGCGACGCGCTGAATATCGACGTCACCGTGATCAAGAA CGGCTATTACGGCGACACGAGCCGCATGTTCATCGTCGGCGAGGGCTCGATCATGGCGAAGCGCCTCGTCCAGACCACGT ATGAATGCATGTGGCTCGGCATCGAGCAGGTGCGCCCCGGCGCGCATCTCGGCGACATCGGCCATGCGATCCAGAAACAT GCGGAAAGCCTCGGCTACAGCGTCGTGCGCGAATATTGCGGGCACGGCATCGGCAAGGTCTTCCACGACGAGCCGCAAAT CCTGCACTACGGCCGCCCTGGCACGGGCATCGAACTGCAGGCGGGCATGATTTTCACGATCGAGCCGATGATCAATGCCG GCCGCCGCGATATCCGCACGATGCCCGACCAGTGGACCGTCAAGACCAAGGACCGCAGCCTGTCCGCCCAATGGGAGCAC ACGATCCTCGTCACGCCGACGGGCTACGAAGTGCTGACCGTGTCGGAAGGCACGCCCGCGCGTCCGCAAATCGTCGCCGC CGCCACGGCCTGA
Upstream 100 bases:
>100_bases GCGTGCGTCGCCCGTCAGGCCCAATCATCCCCGCAAACCCCAGCGATCGCGCGAATAAGGTGCGATAATTCCGCGATAAA CCGCATTTCAGGCCCGACTC
Downstream 100 bases:
>100_bases TCACTTTCGCCGCCACCCGCCGCCTATGAGTAGCGTTCACGCTGTCGCCCATTCCGATGCCACGTCTCTCAAGGCGGATT ACAAGGTGGCCAAGACCCCG
Product: methionine aminopeptidase
Products: NA
Alternate protein names: MAP; Peptidase M [H]
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MAITLKNEDDIAQMRIAGRLASEVLDYITPFVKPGVTTGELDRLCHEYMTNVQGTVPAPLNYQPPGYPPFPKAVCTSVND VICHGIPGDKALKNGDALNIDVTVIKNGYYGDTSRMFIVGEGSIMAKRLVQTTYECMWLGIEQVRPGAHLGDIGHAIQKH AESLGYSVVREYCGHGIGKVFHDEPQILHYGRPGTGIELQAGMIFTIEPMINAGRRDIRTMPDQWTVKTKDRSLSAQWEH TILVTPTGYEVLTVSEGTPARPQIVAAATA
Sequences:
>Translated_270_residues MAITLKNEDDIAQMRIAGRLASEVLDYITPFVKPGVTTGELDRLCHEYMTNVQGTVPAPLNYQPPGYPPFPKAVCTSVND VICHGIPGDKALKNGDALNIDVTVIKNGYYGDTSRMFIVGEGSIMAKRLVQTTYECMWLGIEQVRPGAHLGDIGHAIQKH AESLGYSVVREYCGHGIGKVFHDEPQILHYGRPGTGIELQAGMIFTIEPMINAGRRDIRTMPDQWTVKTKDRSLSAQWEH TILVTPTGYEVLTVSEGTPARPQIVAAATA >Mature_269_residues AITLKNEDDIAQMRIAGRLASEVLDYITPFVKPGVTTGELDRLCHEYMTNVQGTVPAPLNYQPPGYPPFPKAVCTSVNDV ICHGIPGDKALKNGDALNIDVTVIKNGYYGDTSRMFIVGEGSIMAKRLVQTTYECMWLGIEQVRPGAHLGDIGHAIQKHA ESLGYSVVREYCGHGIGKVFHDEPQILHYGRPGTGIELQAGMIFTIEPMINAGRRDIRTMPDQWTVKTKDRSLSAQWEHT ILVTPTGYEVLTVSEGTPARPQIVAAATA
Specific function: Removes the amino-terminal methionine from nascent proteins [H]
COG id: COG0024
COG function: function code J; Methionine aminopeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24A family [H]
Homologues:
Organism=Homo sapiens, GI164420681, Length=264, Percent_Identity=47.7272727272727, Blast_Score=245, Evalue=3e-65, Organism=Homo sapiens, GI40385867, Length=252, Percent_Identity=41.6666666666667, Blast_Score=194, Evalue=6e-50, Organism=Escherichia coli, GI1786364, Length=257, Percent_Identity=59.9221789883268, Blast_Score=325, Evalue=2e-90, Organism=Escherichia coli, GI1788728, Length=254, Percent_Identity=25.1968503937008, Blast_Score=71, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71996291, Length=257, Percent_Identity=43.9688715953307, Blast_Score=219, Evalue=1e-57, Organism=Saccharomyces cerevisiae, GI6323273, Length=263, Percent_Identity=44.8669201520913, Blast_Score=222, Evalue=5e-59, Organism=Drosophila melanogaster, GI21355531, Length=263, Percent_Identity=46.3878326996198, Blast_Score=228, Evalue=3e-60, Organism=Drosophila melanogaster, GI24583427, Length=249, Percent_Identity=40.5622489959839, Blast_Score=192, Evalue=2e-49,
Paralogues:
None
Copy number: 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR002467 [H]
Pfam domain/function: PF00557 Peptidase_M24 [H]
EC number: =3.4.11.18 [H]
Molecular weight: Translated: 29562; Mature: 29431
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00680 MAP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAITLKNEDDIAQMRIAGRLASEVLDYITPFVKPGVTTGELDRLCHEYMTNVQGTVPAPL CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC NYQPPGYPPFPKAVCTSVNDVICHGIPGDKALKNGDALNIDVTVIKNGYYGDTSRMFIVG CCCCCCCCCCCHHHHCCCCHHEEECCCCCHHHCCCCEEEEEEEEEECCEECCCCEEEEEE EGSIMAKRLVQTTYECMWLGIEQVRPGAHLGDIGHAIQKHAESLGYSVVREYCGHGIGKV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH FHDEPQILHYGRPGTGIELQAGMIFTIEPMINAGRRDIRTMPDQWTVKTKDRSLSAQWEH CCCCCCEEEECCCCCCEEEECCEEEEEEHHHCCCCHHHHCCCCCEEEEECCCCCCCCCCE TILVTPTGYEVLTVSEGTPARPQIVAAATA EEEECCCCCEEEEECCCCCCCCEEEEEECC >Mature Secondary Structure AITLKNEDDIAQMRIAGRLASEVLDYITPFVKPGVTTGELDRLCHEYMTNVQGTVPAPL EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC NYQPPGYPPFPKAVCTSVNDVICHGIPGDKALKNGDALNIDVTVIKNGYYGDTSRMFIVG CCCCCCCCCCCHHHHCCCCHHEEECCCCCHHHCCCCEEEEEEEEEECCEECCCCEEEEEE EGSIMAKRLVQTTYECMWLGIEQVRPGAHLGDIGHAIQKHAESLGYSVVREYCGHGIGKV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH FHDEPQILHYGRPGTGIELQAGMIFTIEPMINAGRRDIRTMPDQWTVKTKDRSLSAQWEH CCCCCCEEEECCCCCCEEEECCEEEEEEHHHCCCCHHHHCCCCCEEEEECCCCCCCCCCE TILVTPTGYEVLTVSEGTPARPQIVAAATA EEEECCCCCEEEEECCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]