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The map label for this gene is rnfH

Identifier: 186476074

GI number: 186476074

Start: 1475565

End: 1475897

Strand: Reverse

Name: rnfH

Synonym: Bphy_1316

Alternate gene names: 186476074

Gene position: 1475897-1475565 (Counterclockwise)

Preceding gene: 186476075

Following gene: 186476072

Centisome position: 42.42

GC content: 65.47

Gene sequence:

>333_bases
ATGAGCGCCCATCTGACCGTCCAGGTGTGCTACGCGTTGCCCGGCGAACAGACGCTGATCCAGCTGCAACTGCCGCCAGG
CGTGACGCTGCGCCAGGCGATCGACGCCAGCGGCGTGCTCACGCGGCACCCGGAGATTGATCTGACGAAGCACAAGACGG
GCGTGTACGGCAAGCTCAAGCCATTGGACGCCGTGCTGGCCGACCATGATCGCGTCGAAATCTACCGGCCGCTGATCGTC
GATCCGAAGCTCGCGCGGCAGCGGCGCGTCGAGAAATCGCGTCAGGAGGGATCGGTCGAAGGGCGCAAGTGGCTGCCGAA
GGATTCGCGCTGA

Upstream 100 bases:

>100_bases
ACATCCTGCTGGAGAAAATCATCGGGCCCGTGTTCAGCCATATCGCGAACACCTTCGTCGAATCGTTCGTGAAGCGCGCC
GACCAGCGCTATGGCAAGCC

Downstream 100 bases:

>100_bases
CGTCTCGCTGCCACCTGCAATGCCAAACGACGAAAGGCGCACCGTATCACGCGGTGCGCCTTTTCTTCGTGCCGCCTGAA
TCGGGATGCCACGGCCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSAHLTVQVCYALPGEQTLIQLQLPPGVTLRQAIDASGVLTRHPEIDLTKHKTGVYGKLKPLDAVLADHDRVEIYRPLIV
DPKLARQRRVEKSRQEGSVEGRKWLPKDSR

Sequences:

>Translated_110_residues
MSAHLTVQVCYALPGEQTLIQLQLPPGVTLRQAIDASGVLTRHPEIDLTKHKTGVYGKLKPLDAVLADHDRVEIYRPLIV
DPKLARQRRVEKSRQEGSVEGRKWLPKDSR
>Mature_109_residues
SAHLTVQVCYALPGEQTLIQLQLPPGVTLRQAIDASGVLTRHPEIDLTKHKTGVYGKLKPLDAVLADHDRVEIYRPLIVD
PKLARQRRVEKSRQEGSVEGRKWLPKDSR

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family

Homologues:

Organism=Escherichia coli, GI87082139, Length=93, Percent_Identity=49.4623655913978, Blast_Score=88, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFH_BURP8 (B2JIA4)

Other databases:

- EMBL:   CP001043
- RefSeq:   YP_001857544.1
- ProteinModelPortal:   B2JIA4
- SMR:   B2JIA4
- GeneID:   6242807
- GenomeReviews:   CP001043_GR
- KEGG:   bph:Bphy_1316
- HOGENOM:   HBG700644
- OMA:   PKDVRRK
- ProtClustDB:   CLSK930841
- HAMAP:   MF_00460
- InterPro:   IPR005346

Pfam domain/function: PF03658 UPF0125

EC number: NA

Molecular weight: Translated: 12399; Mature: 12267

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHLTVQVCYALPGEQTLIQLQLPPGVTLRQAIDASGVLTRHPEIDLTKHKTGVYGKLK
CCCEEEEEEEEECCCCCEEEEEECCCCCHHHHHCCCCCEEEECCCCCEECCCCCCCCCCC
PLDAVLADHDRVEIYRPLIVDPKLARQRRVEKSRQEGSVEGRKWLPKDSR
CHHHHHCCCCCEEEECCEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAHLTVQVCYALPGEQTLIQLQLPPGVTLRQAIDASGVLTRHPEIDLTKHKTGVYGKLK
CCEEEEEEEEECCCCCEEEEEECCCCCHHHHHCCCCCEEEECCCCCEECCCCCCCCCCC
PLDAVLADHDRVEIYRPLIVDPKLARQRRVEKSRQEGSVEGRKWLPKDSR
CHHHHHCCCCCEEEECCEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA