| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is yeiH [C]
Identifier: 186476015
GI number: 186476015
Start: 1406503
End: 1407588
Strand: Direct
Name: yeiH [C]
Synonym: Bphy_1256
Alternate gene names: 186476015
Gene position: 1406503-1407588 (Clockwise)
Preceding gene: 186476006
Following gene: 186476016
Centisome position: 40.43
GC content: 65.65
Gene sequence:
>1086_bases ATGTCCACCACCATGCATACCCATGCCGTTCCCGCCGCGCCGTCGTCGACGCGCGGCCAGATCAACGGCATTCTGTTCGT CGCGCTGTTCGCCGCGGCCGTCACCCGCATCGCCGCCATTCCGGCGATTGCCAACCTCGGTATCAGCCCGCTGATCGTCG GCATCGTCGGCGGCATGATCTACGGCAATGCGCTGAAAGACGGCATGCCCGATAGCTGGGCGGCCGGCGTCAATTTCTCG GCGCGCAAACTGCTGCGCATCGCCGTCGCCTTCTTCGGGCTGCGCGTGAGCTTGCAGGAAATCGCGCAAGTCGGCTTGCC GGGTCTCGCCGAATCGCTGCTGATCGTGGTCAGCACGCTCGTCATCGGCACCTGGGCGGGCATGAAGCTGATGAAGCTGG ACCGCGATAGCGCGCTGCTCACGGCAGCAGGCAGCGCGATCTGTGGCGCGGCCGCCGTGCTCGCGTTCGAATCGACGCTG CAATCGAAGCCTCACAAGAGCGCGATGGCCGTCGGCAGCGTGGTGCTGTTCGGCACGCTGTCGATGTTCCTTTATCCCGC GCTGCTGCGCGCCGGTCTCATCCATCTCGATACGACGGGCGTCGGCCTGTTCTTCGGGGGTACGATTCACGAAGTCGCGC AGGTGGTCGGCGCGGCGAGCAACGTGAGCCCGGAAGCGACGCATATCGCCACCATCGTCAAGATGACCCGCGTGATGCTG CTCGTGCCCGTGCTGCTGATCGTCGGCCTGTGGGTGAGCCGCTCGGCGCGCAATGCGGCGGCGAAGGCGGGACACGATGC AGCGCATGCACCGCGCAAGCTCGCCGTACCCTGGTTCGCACTCGGCTTCCTCGCCTGTGTCGCGGTGAACTCGCTGCACA TCCTGCCCGAAGCTGCCACGAGCACCATGAACATGCTCGACACGTTCGCGCTGACGATGGCCATGACGGCGCTCGGCATC GAAACGCGGCTGTCGCAGATCCGCGATGCCGGTCCGCGTGCGCTGACGACGGGTCTGATTCTCTACGTATGGCTGTTCGC GGGCGGTCTCGGCATCACATGGCTCGTCCAGCACCTGTTCGGCTAA
Upstream 100 bases:
>100_bases TTCCGATATATGACATTCTAAATCACGATTTTTCATATCCATATATCTAATTTAGGATTAGGCCATCGAGTCAAGCAGCC TTCAGCAAGAGGTTGAGCCC
Downstream 100 bases:
>100_bases GCCGCCACCTCACTCAGACAAGCCCCGCCGCGTGCGGGGCTTTTGTGCTTTCTGCCTATACCTTCGGGAACACGCCAACG TCATTCGTCGCGCGGCATAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MSTTMHTHAVPAAPSSTRGQINGILFVALFAAAVTRIAAIPAIANLGISPLIVGIVGGMIYGNALKDGMPDSWAAGVNFS ARKLLRIAVAFFGLRVSLQEIAQVGLPGLAESLLIVVSTLVIGTWAGMKLMKLDRDSALLTAAGSAICGAAAVLAFESTL QSKPHKSAMAVGSVVLFGTLSMFLYPALLRAGLIHLDTTGVGLFFGGTIHEVAQVVGAASNVSPEATHIATIVKMTRVML LVPVLLIVGLWVSRSARNAAAKAGHDAAHAPRKLAVPWFALGFLACVAVNSLHILPEAATSTMNMLDTFALTMAMTALGI ETRLSQIRDAGPRALTTGLILYVWLFAGGLGITWLVQHLFG
Sequences:
>Translated_361_residues MSTTMHTHAVPAAPSSTRGQINGILFVALFAAAVTRIAAIPAIANLGISPLIVGIVGGMIYGNALKDGMPDSWAAGVNFS ARKLLRIAVAFFGLRVSLQEIAQVGLPGLAESLLIVVSTLVIGTWAGMKLMKLDRDSALLTAAGSAICGAAAVLAFESTL QSKPHKSAMAVGSVVLFGTLSMFLYPALLRAGLIHLDTTGVGLFFGGTIHEVAQVVGAASNVSPEATHIATIVKMTRVML LVPVLLIVGLWVSRSARNAAAKAGHDAAHAPRKLAVPWFALGFLACVAVNSLHILPEAATSTMNMLDTFALTMAMTALGI ETRLSQIRDAGPRALTTGLILYVWLFAGGLGITWLVQHLFG >Mature_360_residues STTMHTHAVPAAPSSTRGQINGILFVALFAAAVTRIAAIPAIANLGISPLIVGIVGGMIYGNALKDGMPDSWAAGVNFSA RKLLRIAVAFFGLRVSLQEIAQVGLPGLAESLLIVVSTLVIGTWAGMKLMKLDRDSALLTAAGSAICGAAAVLAFESTLQ SKPHKSAMAVGSVVLFGTLSMFLYPALLRAGLIHLDTTGVGLFFGGTIHEVAQVVGAASNVSPEATHIATIVKMTRVMLL VPVLLIVGLWVSRSARNAAAKAGHDAAHAPRKLAVPWFALGFLACVAVNSLHILPEAATSTMNMLDTFALTMAMTALGIE TRLSQIRDAGPRALTTGLILYVWLFAGGLGITWLVQHLFG
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=319, Percent_Identity=38.2445141065831, Blast_Score=217, Evalue=8e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004630 - InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 37536; Mature: 37405
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTMHTHAVPAAPSSTRGQINGILFVALFAAAVTRIAAIPAIANLGISPLIVGIVGGMI CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH YGNALKDGMPDSWAAGVNFSARKLLRIAVAFFGLRVSLQEIAQVGLPGLAESLLIVVSTL HHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VIGTWAGMKLMKLDRDSALLTAAGSAICGAAAVLAFESTLQSKPHKSAMAVGSVVLFGTL HHHHHCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SMFLYPALLRAGLIHLDTTGVGLFFGGTIHEVAQVVGAASNVSPEATHIATIVKMTRVML HHHHHHHHHHCCEEEEECCCCHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH LVPVLLIVGLWVSRSARNAAAKAGHDAAHAPRKLAVPWFALGFLACVAVNSLHILPEAAT HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHCHHHHHHHHHHHHHHHHHHCCCHHHH STMNMLDTFALTMAMTALGIETRLSQIRDAGPRALTTGLILYVWLFAGGLGITWLVQHLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC G C >Mature Secondary Structure STTMHTHAVPAAPSSTRGQINGILFVALFAAAVTRIAAIPAIANLGISPLIVGIVGGMI CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH YGNALKDGMPDSWAAGVNFSARKLLRIAVAFFGLRVSLQEIAQVGLPGLAESLLIVVSTL HHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VIGTWAGMKLMKLDRDSALLTAAGSAICGAAAVLAFESTLQSKPHKSAMAVGSVVLFGTL HHHHHCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SMFLYPALLRAGLIHLDTTGVGLFFGGTIHEVAQVVGAASNVSPEATHIATIVKMTRVML HHHHHHHHHHCCEEEEECCCCHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH LVPVLLIVGLWVSRSARNAAAKAGHDAAHAPRKLAVPWFALGFLACVAVNSLHILPEAAT HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHCHHHHHHHHHHHHHHHHHHCCCHHHH STMNMLDTFALTMAMTALGIETRLSQIRDAGPRALTTGLILYVWLFAGGLGITWLVQHLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]