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The map label for this gene is 186475847

Identifier: 186475847

GI number: 186475847

Start: 1219304

End: 1220521

Strand: Direct

Name: 186475847

Synonym: Bphy_1082

Alternate gene names: NA

Gene position: 1219304-1220521 (Clockwise)

Preceding gene: 186475846

Following gene: 186475848

Centisome position: 35.05

GC content: 64.37

Gene sequence:

>1218_bases
ATGAAAAGACGTTACCCCGAAGTCAAGCTCGCGCTGGCTTGCGCAGCCGTGCTGGCCGCGATGCCCGCCTTCGCGCAGAA
CAGCGTGACGCTGTACGGCATCGTCGATAACGGTATCGGTTATCAGTCGAGCTCGACGACGCTCGGTTCGACCTCGGGCG
GCCACTCGGCCGTCAAGATGGTCACGGGCGTGTGGGCGGGCAGCCGCTTCGGCCTGAAGGGCGCGGAAGATCTGGGCGGC
GGCACGAAGGCCATCTTCACGCTGGAAGAGGGTTTCAGCGCCGCCAACGGCGCGATGGCGACGAACAACCTGATGTTCAG
CCGCCAGGCGTTCGTCGGCGTGACCAACGACAACTACGGCTCGCTGACGGCAGGCCGCCAGTACACGTCCTACTACCAGT
TGCTGTCGCCGTACAGCCCGACGACGTGGCTCACGGGCTTCTATGGCGCGCACGCGGGCGACGTCGACGGTCTCGACACG
ATCTACCGCGCAAACAACACGCTGCTGTACATGTCGCCGAAACTCTACGGCTTCAAGTTCAGCGGTTCGTATTCGTTTGC
GGGCGTGCCGGGTAGCGCATACCAGGGTTCGACGTGGAGCACGGCTGTGCAATACGCGCAGGGCCCCATCGGCATCGCGG
TCGGCTTCTCGAAGATCAACAACTCGAACGTGAACGGCGGCACCTTCGGCACCGACACGGCGACGTCGAATGGCGGCGCG
CAGTCGGGTGTGTCGGCCGTGACCAACGGCTACCAGACGGCGCGTGCGCAGCAGCGCTTCGCGGTCGGCGCGGGCTACAC
GTTCAACAGCCAGTTCGACATCACGGCGACGTATTCGAACGTGCAGTACATCCCGGGCATCGGTTCGTCCTACCGCAATC
TGGCGATCTGGAATTCGGGCGGCATCGTGCTGCACTGGAAGCCGACGGCCGCCTGGGACTTCGCGACGGGCTACGCATAC
ACGCGCGCGACCAAGTCGAACGGCATCTCGAGCAGCGCGTCGTATTCGCAGGTCAACCTGTCCGAGTACTACTCGCTGTC
CAAGCGCACGGGCATCTACGCGCTGCAGGCCTATCAGCGCGCGAACGGCCAGACGCTCGGCACGAACGGCCGCAGCATCA
TCAACGCAACGGCCACGATCGGCGACGGCTTCAACTCGACGCCTTCGTCGTCTCGTAGCATGGTCGGCGTCGGAGCGGGC
ATCATTCACCGCTTCTGA

Upstream 100 bases:

>100_bases
ATAACCACGCAGCACTGGCGGCGACGGTCTTTCTTTGTCCGTTCGCCGGCAAAGCGATGCGCTGCATCGCCATAACACTC
AAACAGAAAGGGATCAGGAG

Downstream 100 bases:

>100_bases
TGCGGTTTTTTGCCGGCTTTTGCCATATGAGCGCTGTTTGACGTCAGGTTGAAGCCGGTTTGACGTTTGCGTGAAGCAGG
ACAGGGCGCCGCAATTGCGG

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKRRYPEVKLALACAAVLAAMPAFAQNSVTLYGIVDNGIGYQSSSTTLGSTSGGHSAVKMVTGVWAGSRFGLKGAEDLGG
GTKAIFTLEEGFSAANGAMATNNLMFSRQAFVGVTNDNYGSLTAGRQYTSYYQLLSPYSPTTWLTGFYGAHAGDVDGLDT
IYRANNTLLYMSPKLYGFKFSGSYSFAGVPGSAYQGSTWSTAVQYAQGPIGIAVGFSKINNSNVNGGTFGTDTATSNGGA
QSGVSAVTNGYQTARAQQRFAVGAGYTFNSQFDITATYSNVQYIPGIGSSYRNLAIWNSGGIVLHWKPTAAWDFATGYAY
TRATKSNGISSSASYSQVNLSEYYSLSKRTGIYALQAYQRANGQTLGTNGRSIINATATIGDGFNSTPSSSRSMVGVGAG
IIHRF

Sequences:

>Translated_405_residues
MKRRYPEVKLALACAAVLAAMPAFAQNSVTLYGIVDNGIGYQSSSTTLGSTSGGHSAVKMVTGVWAGSRFGLKGAEDLGG
GTKAIFTLEEGFSAANGAMATNNLMFSRQAFVGVTNDNYGSLTAGRQYTSYYQLLSPYSPTTWLTGFYGAHAGDVDGLDT
IYRANNTLLYMSPKLYGFKFSGSYSFAGVPGSAYQGSTWSTAVQYAQGPIGIAVGFSKINNSNVNGGTFGTDTATSNGGA
QSGVSAVTNGYQTARAQQRFAVGAGYTFNSQFDITATYSNVQYIPGIGSSYRNLAIWNSGGIVLHWKPTAAWDFATGYAY
TRATKSNGISSSASYSQVNLSEYYSLSKRTGIYALQAYQRANGQTLGTNGRSIINATATIGDGFNSTPSSSRSMVGVGAG
IIHRF
>Mature_405_residues
MKRRYPEVKLALACAAVLAAMPAFAQNSVTLYGIVDNGIGYQSSSTTLGSTSGGHSAVKMVTGVWAGSRFGLKGAEDLGG
GTKAIFTLEEGFSAANGAMATNNLMFSRQAFVGVTNDNYGSLTAGRQYTSYYQLLSPYSPTTWLTGFYGAHAGDVDGLDT
IYRANNTLLYMSPKLYGFKFSGSYSFAGVPGSAYQGSTWSTAVQYAQGPIGIAVGFSKINNSNVNGGTFGTDTATSNGGA
QSGVSAVTNGYQTARAQQRFAVGAGYTFNSQFDITATYSNVQYIPGIGSSYRNLAIWNSGGIVLHWKPTAAWDFATGYAY
TRATKSNGISSSASYSQVNLSEYYSLSKRTGIYALQAYQRANGQTLGTNGRSIINATATIGDGFNSTPSSSRSMVGVGAG
IIHRF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42541; Mature: 42541

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRYPEVKLALACAAVLAAMPAFAQNSVTLYGIVDNGIGYQSSSTTLGSTSGGHSAVKM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
VTGVWAGSRFGLKGAEDLGGGTKAIFTLEEGFSAANGAMATNNLMFSRQAFVGVTNDNYG
HHHHCCCCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCEEECCEEEECEEEEEECCCCCC
SLTAGRQYTSYYQLLSPYSPTTWLTGFYGAHAGDVDGLDTIYRANNTLLYMSPKLYGFKF
CCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHEECCCEEEEECCCEEEEEE
SGSYSFAGVPGSAYQGSTWSTAVQYAQGPIGIAVGFSKINNSNVNGGTFGTDTATSNGGA
CCCEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
QSGVSAVTNGYQTARAQQRFAVGAGYTFNSQFDITATYSNVQYIPGIGSSYRNLAIWNSG
HHCHHHHHCCHHHHHHHHHEEEECCEEECCEEEEEEEECCEEECCCCCCCCCEEEEECCC
GIVLHWKPTAAWDFATGYAYTRATKSNGISSSASYSQVNLSEYYSLSKRTGIYALQAYQR
CEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEHHH
ANGQTLGTNGRSIINATATIGDGFNSTPSSSRSMVGVGAGIIHRF
CCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEECHHHHHCC
>Mature Secondary Structure
MKRRYPEVKLALACAAVLAAMPAFAQNSVTLYGIVDNGIGYQSSSTTLGSTSGGHSAVKM
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
VTGVWAGSRFGLKGAEDLGGGTKAIFTLEEGFSAANGAMATNNLMFSRQAFVGVTNDNYG
HHHHCCCCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCEEECCEEEECEEEEEECCCCCC
SLTAGRQYTSYYQLLSPYSPTTWLTGFYGAHAGDVDGLDTIYRANNTLLYMSPKLYGFKF
CCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHEECCCEEEEECCCEEEEEE
SGSYSFAGVPGSAYQGSTWSTAVQYAQGPIGIAVGFSKINNSNVNGGTFGTDTATSNGGA
CCCEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
QSGVSAVTNGYQTARAQQRFAVGAGYTFNSQFDITATYSNVQYIPGIGSSYRNLAIWNSG
HHCHHHHHCCHHHHHHHHHEEEECCEEECCEEEEEEEECCEEECCCCCCCCCEEEEECCC
GIVLHWKPTAAWDFATGYAYTRATKSNGISSSASYSQVNLSEYYSLSKRTGIYALQAYQR
CEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEHHH
ANGQTLGTNGRSIINATATIGDGFNSTPSSSRSMVGVGAGIIHRF
CCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEECHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]