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The map label for this gene is yfdE [H]

Identifier: 186475719

GI number: 186475719

Start: 1066040

End: 1067305

Strand: Direct

Name: yfdE [H]

Synonym: Bphy_0954

Alternate gene names: 186475719

Gene position: 1066040-1067305 (Clockwise)

Preceding gene: 186475718

Following gene: 186475720

Centisome position: 30.64

GC content: 64.3

Gene sequence:

>1266_bases
ATGAGCGCACCCACTTCAACGGCGAATGGCAATCCCGACGCCAAACCCGGCGCCAAACCCGGCGCCCAACGCGGCGGCCC
GCTAGCGGGCGTGAAAGTGCTGGAACTCGGCACGCTGATCGCGGGCCCGTTCGCGGCCCGCTTTCTCGGCGAGTTCGGCG
CGGATGTCATCAAGATCGAAGACCCGAAGGGCGGCGATCCGCTGCGCAAGTGGCGCAAGCTCTATCCAGAAGTGGGCGGC
ACGTCGCTGTGGTGGGCCGTGCAGGCGCGTAACAAGAAGTCGGTAACGATCAATCTGAAGGCCGACGAAGGCAAGGAGAT
CGTCCGCAAGCTCGCGCAGGAGGCGGACATCGTCGTCGAGAATTTCCGGCCCGGTCTGCTCGAAAAGCTCGGGCTCGGCT
ATGACGTGCTGTCGGCGGAAAACCCCGGTCTGGTGATGGTGCGTCTGTCCGGCTACGGCCAGACAGGGCCGTATCGCGAT
CGTCCGGGCTTCGGCGCGATCGCCGAATCGATGGGCGGCTTGCGCCACATCACCGGCTATCCGGACTTGCCGCCGCCGCG
CATCGGCATATCGATTGGCGATTCGATCGCGGCGCTGCACGGTGTGATCGGCGCGCTGATGGCGTTGCATCACCGGCAGG
CGAATGGCGGCAAAGGGCAGGTCGTCGACGTCGCGCTGTACGAAGCCGTCTTTAACATGATGGAAAGCGTCGTGCCCGAA
TACGGCGTGTACGGCATGGTGCGCGAGCGCACGGGGGCGTCGTTGCCTGGCATTGTGCCGTCCAATACCTATCCGTGCCG
CGACGGCAGCATCGTGATCGGCGGCAACAGCGATCCCATTTTCAGGCGGCTGATGCTCGCGATCAATCGTGACGATCTCG
CGAACGATCCCGCGCTCGCGCATAACGACGGCCGCGTGCCGCGCACGCAGGAAATCGACGGTGCGATTGCGGCGTGGCTC
GCCGACCGCACGATCGACGAAGCGCTCGGTGTGCTCAACGCCGCCGACGTGCCCGTGGGCCGCATCTACAGCGTCGCCGA
CATGTTCACCGATCCGCAGTACGTCGCACGCCAGATGATCCAGACCTTCAAGTGGCAGGACGGACGCGATATCACGCTGC
CGAACGTCACGCCGAAGCTCTCGGAAACGCCCGGCGAGACACGGTGGCTAGGACCCGAACTGGGTGAACATACGGATGAA
GTTCTGCAAACGCTGGGTTATGATGCGGACCACATCGCAAGGTTGCACGCGCAACAGATCGTGTAG

Upstream 100 bases:

>100_bases
GATTGCGCGCGCGATGCTCGACCGGCGCTCGATCTAGGGGGGCGCATGCCGCGAGGCGATCGTGCCGCGCGTGAGGACAG
CAAAAAAGTTCAGGAGACAC

Downstream 100 bases:

>100_bases
CCGGCGGCCACACTAACGCGCACCGGCGCACGGCGCGAAGACGGACGAGCAGTCCGCGACAGAACAAGAACGGAGACAGG
ACCATGCAACGAAGAAGCTT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MSAPTSTANGNPDAKPGAKPGAQRGGPLAGVKVLELGTLIAGPFAARFLGEFGADVIKIEDPKGGDPLRKWRKLYPEVGG
TSLWWAVQARNKKSVTINLKADEGKEIVRKLAQEADIVVENFRPGLLEKLGLGYDVLSAENPGLVMVRLSGYGQTGPYRD
RPGFGAIAESMGGLRHITGYPDLPPPRIGISIGDSIAALHGVIGALMALHHRQANGGKGQVVDVALYEAVFNMMESVVPE
YGVYGMVRERTGASLPGIVPSNTYPCRDGSIVIGGNSDPIFRRLMLAINRDDLANDPALAHNDGRVPRTQEIDGAIAAWL
ADRTIDEALGVLNAADVPVGRIYSVADMFTDPQYVARQMIQTFKWQDGRDITLPNVTPKLSETPGETRWLGPELGEHTDE
VLQTLGYDADHIARLHAQQIV

Sequences:

>Translated_421_residues
MSAPTSTANGNPDAKPGAKPGAQRGGPLAGVKVLELGTLIAGPFAARFLGEFGADVIKIEDPKGGDPLRKWRKLYPEVGG
TSLWWAVQARNKKSVTINLKADEGKEIVRKLAQEADIVVENFRPGLLEKLGLGYDVLSAENPGLVMVRLSGYGQTGPYRD
RPGFGAIAESMGGLRHITGYPDLPPPRIGISIGDSIAALHGVIGALMALHHRQANGGKGQVVDVALYEAVFNMMESVVPE
YGVYGMVRERTGASLPGIVPSNTYPCRDGSIVIGGNSDPIFRRLMLAINRDDLANDPALAHNDGRVPRTQEIDGAIAAWL
ADRTIDEALGVLNAADVPVGRIYSVADMFTDPQYVARQMIQTFKWQDGRDITLPNVTPKLSETPGETRWLGPELGEHTDE
VLQTLGYDADHIARLHAQQIV
>Mature_420_residues
SAPTSTANGNPDAKPGAKPGAQRGGPLAGVKVLELGTLIAGPFAARFLGEFGADVIKIEDPKGGDPLRKWRKLYPEVGGT
SLWWAVQARNKKSVTINLKADEGKEIVRKLAQEADIVVENFRPGLLEKLGLGYDVLSAENPGLVMVRLSGYGQTGPYRDR
PGFGAIAESMGGLRHITGYPDLPPPRIGISIGDSIAALHGVIGALMALHHRQANGGKGQVVDVALYEAVFNMMESVVPEY
GVYGMVRERTGASLPGIVPSNTYPCRDGSIVIGGNSDPIFRRLMLAINRDDLANDPALAHNDGRVPRTQEIDGAIAAWLA
DRTIDEALGVLNAADVPVGRIYSVADMFTDPQYVARQMIQTFKWQDGRDITLPNVTPKLSETPGETRWLGPELGEHTDEV
LQTLGYDADHIARLHAQQIV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=31.0606060606061, Blast_Score=202, Evalue=6e-52,
Organism=Homo sapiens, GI300863124, Length=327, Percent_Identity=33.0275229357798, Blast_Score=190, Evalue=3e-48,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=29.5454545454545, Blast_Score=169, Evalue=5e-42,
Organism=Homo sapiens, GI13376042, Length=327, Percent_Identity=28.7461773700306, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=27.25, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=27.25, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI266458393, Length=261, Percent_Identity=29.5019157088123, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=29.5019157088123, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI266458395, Length=131, Percent_Identity=35.8778625954198, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=131, Percent_Identity=35.8778625954198, Blast_Score=90, Evalue=3e-18,
Organism=Escherichia coli, GI87082093, Length=338, Percent_Identity=33.4319526627219, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI1788717, Length=426, Percent_Identity=30.0469483568075, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1786222, Length=402, Percent_Identity=30.5970149253731, Blast_Score=160, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI115535051, Length=337, Percent_Identity=28.486646884273, Blast_Score=118, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI32564160, Length=279, Percent_Identity=29.0322580645161, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=33.9195979899498, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI24585488, Length=366, Percent_Identity=28.4153005464481, Blast_Score=105, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45247; Mature: 45116

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPTSTANGNPDAKPGAKPGAQRGGPLAGVKVLELGTLIAGPFAARFLGEFGADVIKIE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DPKGGDPLRKWRKLYPEVGGTSLWWAVQARNKKSVTINLKADEGKEIVRKLAQEADIVVE
CCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
NFRPGLLEKLGLGYDVLSAENPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
CCCCHHHHHHCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCC
PDLPPPRIGISIGDSIAALHGVIGALMALHHRQANGGKGQVVDVALYEAVFNMMESVVPE
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCC
YGVYGMVRERTGASLPGIVPSNTYPCRDGSIVIGGNSDPIFRRLMLAINRDDLANDPALA
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
HNDGRVPRTQEIDGAIAAWLADRTIDEALGVLNAADVPVGRIYSVADMFTDPQYVARQMI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
QTFKWQDGRDITLPNVTPKLSETPGETRWLGPELGEHTDEVLQTLGYDADHIARLHAQQI
HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
V
C
>Mature Secondary Structure 
SAPTSTANGNPDAKPGAKPGAQRGGPLAGVKVLELGTLIAGPFAARFLGEFGADVIKIE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DPKGGDPLRKWRKLYPEVGGTSLWWAVQARNKKSVTINLKADEGKEIVRKLAQEADIVVE
CCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
NFRPGLLEKLGLGYDVLSAENPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
CCCCHHHHHHCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCC
PDLPPPRIGISIGDSIAALHGVIGALMALHHRQANGGKGQVVDVALYEAVFNMMESVVPE
CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCC
YGVYGMVRERTGASLPGIVPSNTYPCRDGSIVIGGNSDPIFRRLMLAINRDDLANDPALA
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
HNDGRVPRTQEIDGAIAAWLADRTIDEALGVLNAADVPVGRIYSVADMFTDPQYVARQMI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
QTFKWQDGRDITLPNVTPKLSETPGETRWLGPELGEHTDEVLQTLGYDADHIARLHAQQI
HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]