| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475705
Identifier: 186475705
GI number: 186475705
Start: 1044534
End: 1045094
Strand: Reverse
Name: 186475705
Synonym: Bphy_0940
Alternate gene names: NA
Gene position: 1045094-1044534 (Counterclockwise)
Preceding gene: 186475706
Following gene: 186475704
Centisome position: 30.04
GC content: 64.35
Gene sequence:
>561_bases ATGTTGAAAAAGCTGTTGATACTGTGCGTTGCGCTCGTGCTGTCGCTGTCAGCGGGATTGGCGGCCGCCGTCGAAGTCAA TACGGCCGACCAGGCCGCGCTCGAATCGGTCAAGGGCATCGGGCCCGTCCATGCGAAAGCGATCATCGACGAACGCACGA AGAACGGCCCGTTCAAGGACGCCGACGATCTCGCCAACCGGGTCAAGGGTATCGGCCAGAAGTCGGTGAAGAATCTCGAA GCGGCGGGCCTGACGATCAACGGCTCGTCGGCACCGCCGTCAGGCGCGCCGGCCAAACCGACGGCTGCGGCGACATCGAA GCCCGCGCCTGCTGCAACCACGACGCAAAACCCGATGCAAACGACGACGCAAACCACATCCGCCGACGCCGCATCGGGCG CGAAAGCATCGAAGTCCAAGAAGAGCAAGACCGACGCGGCTGCCGCATCGGCGCCCGCTGCTACTGCGCCATCGGCGCCC GCGACGGCGTCGGACACGACCGCTTCGAAGTCGAAGAAAGCGAAGAAGAGCAAGGCTGCGTCCGCTGCATCGGGCGCATA A
Upstream 100 bases:
>100_bases AAACCGGACAGTAAATTGTCCTATGCTTGAACGCAGTGCTTGCTCAAATGAAAGCGTCGTCCGTTCCGGCTACCTGTTTG CCCTCAATGGAGTGATTGCC
Downstream 100 bases:
>100_bases GAACGCGCAGTCCGTCAGCGGCTGGCGGCCGCACTTCCTCACGATCATCGGTGCCGCGCTTCGCGCGGCGTTTCGTTCCC TGCCGGCGCACGCCTGACGC
Product: putative DNA uptake protein, ComEA-like protein
Products: NA
Alternate protein names: DNA Uptake Protein; ComEA-Related Signal Peptide Protein; Helix-Hairpin-Helix Motif Protein; Competence Protein ComEA Helix-Hairpin-Helix Region; DNA Uptake Protein ComEA-Like; Helix-Turn-Helix Protein; Helix-Hairpin-Helix Motif; ComE Protein
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MLKKLLILCVALVLSLSAGLAAAVEVNTADQAALESVKGIGPVHAKAIIDERTKNGPFKDADDLANRVKGIGQKSVKNLE AAGLTINGSSAPPSGAPAKPTAAATSKPAPAATTTQNPMQTTTQTTSADAASGAKASKSKKSKTDAAAASAPAATAPSAP ATASDTTASKSKKAKKSKAASAASGA
Sequences:
>Translated_186_residues MLKKLLILCVALVLSLSAGLAAAVEVNTADQAALESVKGIGPVHAKAIIDERTKNGPFKDADDLANRVKGIGQKSVKNLE AAGLTINGSSAPPSGAPAKPTAAATSKPAPAATTTQNPMQTTTQTTSADAASGAKASKSKKSKTDAAAASAPAATAPSAP ATASDTTASKSKKAKKSKAASAASGA >Mature_186_residues MLKKLLILCVALVLSLSAGLAAAVEVNTADQAALESVKGIGPVHAKAIIDERTKNGPFKDADDLANRVKGIGQKSVKNLE AAGLTINGSSAPPSGAPAKPTAAATSKPAPAATTTQNPMQTTTQTTSADAASGAKASKSKKSKTDAAAASAPAATAPSAP ATASDTTASKSKKAKKSKAASAASGA
Specific function: Unknown
COG id: COG1555
COG function: function code L; DNA uptake protein and related DNA-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18104; Mature: 18104
Theoretical pI: Translated: 10.72; Mature: 10.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKLLILCVALVLSLSAGLAAAVEVNTADQAALESVKGIGPVHAKAIIDERTKNGPFKD CHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC ADDLANRVKGIGQKSVKNLEAAGLTINGSSAPPSGAPAKPTAAATSKPAPAATTTQNPMQ HHHHHHHHHHCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH TTTQTTSADAASGAKASKSKKSKTDAAAASAPAATAPSAPATASDTTASKSKKAKKSKAA HHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH SAASGA HHCCCC >Mature Secondary Structure MLKKLLILCVALVLSLSAGLAAAVEVNTADQAALESVKGIGPVHAKAIIDERTKNGPFKD CHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC ADDLANRVKGIGQKSVKNLEAAGLTINGSSAPPSGAPAKPTAAATSKPAPAATTTQNPMQ HHHHHHHHHHCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH TTTQTTSADAASGAKASKSKKSKTDAAAASAPAATAPSAPATASDTTASKSKKAKKSKAA HHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH SAASGA HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA