| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475550
Identifier: 186475550
GI number: 186475550
Start: 880032
End: 881315
Strand: Reverse
Name: 186475550
Synonym: Bphy_0785
Alternate gene names: NA
Gene position: 881315-880032 (Counterclockwise)
Preceding gene: 186475551
Following gene: 186475549
Centisome position: 25.33
GC content: 63.79
Gene sequence:
>1284_bases ATGTCCCGGCTCTCCCATCGCCGGCGGAACGTCGCGCCGTATCCACCGCCGTGCTTCCAACTTGCGGATTGTGTGCGCAA GTGCACGCACAGGCGAGCGTCGACACGTCTACCCTCGCAGGTATTCCGCTTACTAAACGGTGCACTCGATGAGGGACCTG CGTTGCCGCCATATCGTCAGCCAGCAGTTCGACACAGCTGCGGTGCGGCGGCGCTCGCGACCCTCCTCAAGTACGACTGC GGGATCGACATCCCCAAAACGGATCTGATCCGCCGGATGATGGTTGTCTCGACGCCGGAGGTGGTGGTGAGGAACGGCTT CTCGATGCTCGACATGAAGAAATCCCTCGAGACGATCGGGCTGCGGGGCCGCGGCTTCCGGGTGAACACGGACGCGCTGT ATCACCTCCAGATTCCCGTCATGGTTCTGATGAACCTCGACGGCTATGAGCATTTCGTGATCGTCAAGCACGCGCAGGAC GGCCGCATCTTCATCGCGGCCCCCGCACTCGGCAACGGGACCCTGCTCGAGGAGGATTTCGCGAAATCAATGGTCTCGTG TTCGCAGTCGTCGGGAAACCGTTCAGGGACGATTCCCCGCTGTTGCAGGACAACGAGTCGCTGGCCTCGCGGCTGCGCGA ACCTGCGCCCAAAAGGCGCGGGCGGACAAATCATCGCCGGTTTCGTATTGAACGTGCTTTCGCAATGGCAGTTGCCGAAC GGCGCGAAGGCGCTCGCGCAAGGCCCTCTTTCCGTTGCACGCGATGCGGCGAACGCGCTGACGGCCAACGTCAATACGCT CGCGCGCGTCACCGACGGCCACGGCAATCCGGGCGCAGACCCGAATGCGCGGCCCGGCGGCCGACAGCACATCGCGGTCA ACCGCGTGTTGCAGGTCACGCAGGTCGCGGGCGATCGCAACCCCGGATTCAATACGGCGACGATCGACTTCAACAACCAT CGGCAACTGGTGGCGGGCGGCACCCGTGCCCAGAGCGCGGCGGCATCGAACACGGCGGGCAACGTCAAGGCGGACATTTC GCTCGGCAACGGCGGCGTGACGGTCGGGCGGCAGACGCCCGCCGGCATTGCGTCGCAAACCATTGCACCGGGCAACGCGC AACAGGCCGGCGCGATTGCGCAACTGCTGCACATTGCAGGCAATAACCAGCAAGTCGCCAACCAGTTGCAGATCTCGCTG CACACGGCACCCATCTCGTCCGCGATGCTGCGCCAGGCAGGCGTACTACAAGCTCTGCAAAACGCGGTGAATGCAAGGAG ATAA
Upstream 100 bases:
>100_bases ATGGATACGAGCCGCTAAACAGGCAGCGGTAGCAGGAACAGCCATACGGGATGCGCCGGCGGCCGATGCAGCCGCCGGCG CATTCGGGAAGGAGACCAGC
Downstream 100 bases:
>100_bases GGCGGGCCGCCACCCGTCAACCCGTGTCACCAGGAGGAGAAGCCGTACTAAAGGCGGCAGCATCAGAACGAATCAGGCGC TGCCACTTTCACCGGGGGAA
Product: peptidase C39 bacteriocin processing
Products: NA
Alternate protein names: Double-Glycine Peptidase; C39 Family Peptidase; Bacteriocin Processing Protein Peptidase; Peptidase Protein; Periplasmic Protein
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MSRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQPAVRHSCGAAALATLLKYDC GIDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIGLRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQD GRIFIAAPALGNGTLLEEDFAKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPN GAKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVTQVAGDRNPGFNTATIDFNNH RQLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTPAGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISL HTAPISSAMLRQAGVLQALQNAVNARR
Sequences:
>Translated_427_residues MSRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQPAVRHSCGAAALATLLKYDC GIDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIGLRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQD GRIFIAAPALGNGTLLEEDFAKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPN GAKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVTQVAGDRNPGFNTATIDFNNH RQLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTPAGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISL HTAPISSAMLRQAGVLQALQNAVNARR >Mature_426_residues SRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQPAVRHSCGAAALATLLKYDCG IDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIGLRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQDG RIFIAAPALGNGTLLEEDFAKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPNG AKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVTQVAGDRNPGFNTATIDFNNHR QLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTPAGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISLH TAPISSAMLRQAGVLQALQNAVNARR
Specific function: Unknown
COG id: COG3271
COG function: function code R; Predicted double-glycine peptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45370; Mature: 45238
Theoretical pI: Translated: 11.26; Mature: 11.26
Prosite motif: PS50990 PEPTIDASE_C39
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQ CCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC PAVRHSCGAAALATLLKYDCGIDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIG CHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHC LRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQDGRIFIAAPALGNGTLLEEDF CCCCCEEECCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCCEEHHHH AKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPN HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC GAKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVT CHHHHHHCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH QVAGDRNPGFNTATIDFNNHRQLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTP HHHCCCCCCCCEEEEEECCCEEEEECCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCC AGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISLHTAPISSAMLRQAGVLQALQ CCCHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHH NAVNARR HHHHCCC >Mature Secondary Structure SRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQ CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC PAVRHSCGAAALATLLKYDCGIDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIG CHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHC LRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQDGRIFIAAPALGNGTLLEEDF CCCCCEEECCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCCEEHHHH AKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPN HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC GAKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVT CHHHHHHCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH QVAGDRNPGFNTATIDFNNHRQLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTP HHHCCCCCCCCEEEEEECCCEEEEECCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCC AGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISLHTAPISSAMLRQAGVLQALQ CCCHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHH NAVNARR HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA