Definition Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence.
Accession NC_010622
Length 3,479,187

Click here to switch to the map view.

The map label for this gene is 186475550

Identifier: 186475550

GI number: 186475550

Start: 880032

End: 881315

Strand: Reverse

Name: 186475550

Synonym: Bphy_0785

Alternate gene names: NA

Gene position: 881315-880032 (Counterclockwise)

Preceding gene: 186475551

Following gene: 186475549

Centisome position: 25.33

GC content: 63.79

Gene sequence:

>1284_bases
ATGTCCCGGCTCTCCCATCGCCGGCGGAACGTCGCGCCGTATCCACCGCCGTGCTTCCAACTTGCGGATTGTGTGCGCAA
GTGCACGCACAGGCGAGCGTCGACACGTCTACCCTCGCAGGTATTCCGCTTACTAAACGGTGCACTCGATGAGGGACCTG
CGTTGCCGCCATATCGTCAGCCAGCAGTTCGACACAGCTGCGGTGCGGCGGCGCTCGCGACCCTCCTCAAGTACGACTGC
GGGATCGACATCCCCAAAACGGATCTGATCCGCCGGATGATGGTTGTCTCGACGCCGGAGGTGGTGGTGAGGAACGGCTT
CTCGATGCTCGACATGAAGAAATCCCTCGAGACGATCGGGCTGCGGGGCCGCGGCTTCCGGGTGAACACGGACGCGCTGT
ATCACCTCCAGATTCCCGTCATGGTTCTGATGAACCTCGACGGCTATGAGCATTTCGTGATCGTCAAGCACGCGCAGGAC
GGCCGCATCTTCATCGCGGCCCCCGCACTCGGCAACGGGACCCTGCTCGAGGAGGATTTCGCGAAATCAATGGTCTCGTG
TTCGCAGTCGTCGGGAAACCGTTCAGGGACGATTCCCCGCTGTTGCAGGACAACGAGTCGCTGGCCTCGCGGCTGCGCGA
ACCTGCGCCCAAAAGGCGCGGGCGGACAAATCATCGCCGGTTTCGTATTGAACGTGCTTTCGCAATGGCAGTTGCCGAAC
GGCGCGAAGGCGCTCGCGCAAGGCCCTCTTTCCGTTGCACGCGATGCGGCGAACGCGCTGACGGCCAACGTCAATACGCT
CGCGCGCGTCACCGACGGCCACGGCAATCCGGGCGCAGACCCGAATGCGCGGCCCGGCGGCCGACAGCACATCGCGGTCA
ACCGCGTGTTGCAGGTCACGCAGGTCGCGGGCGATCGCAACCCCGGATTCAATACGGCGACGATCGACTTCAACAACCAT
CGGCAACTGGTGGCGGGCGGCACCCGTGCCCAGAGCGCGGCGGCATCGAACACGGCGGGCAACGTCAAGGCGGACATTTC
GCTCGGCAACGGCGGCGTGACGGTCGGGCGGCAGACGCCCGCCGGCATTGCGTCGCAAACCATTGCACCGGGCAACGCGC
AACAGGCCGGCGCGATTGCGCAACTGCTGCACATTGCAGGCAATAACCAGCAAGTCGCCAACCAGTTGCAGATCTCGCTG
CACACGGCACCCATCTCGTCCGCGATGCTGCGCCAGGCAGGCGTACTACAAGCTCTGCAAAACGCGGTGAATGCAAGGAG
ATAA

Upstream 100 bases:

>100_bases
ATGGATACGAGCCGCTAAACAGGCAGCGGTAGCAGGAACAGCCATACGGGATGCGCCGGCGGCCGATGCAGCCGCCGGCG
CATTCGGGAAGGAGACCAGC

Downstream 100 bases:

>100_bases
GGCGGGCCGCCACCCGTCAACCCGTGTCACCAGGAGGAGAAGCCGTACTAAAGGCGGCAGCATCAGAACGAATCAGGCGC
TGCCACTTTCACCGGGGGAA

Product: peptidase C39 bacteriocin processing

Products: NA

Alternate protein names: Double-Glycine Peptidase; C39 Family Peptidase; Bacteriocin Processing Protein Peptidase; Peptidase Protein; Periplasmic Protein

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MSRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQPAVRHSCGAAALATLLKYDC
GIDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIGLRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQD
GRIFIAAPALGNGTLLEEDFAKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPN
GAKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVTQVAGDRNPGFNTATIDFNNH
RQLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTPAGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISL
HTAPISSAMLRQAGVLQALQNAVNARR

Sequences:

>Translated_427_residues
MSRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQPAVRHSCGAAALATLLKYDC
GIDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIGLRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQD
GRIFIAAPALGNGTLLEEDFAKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPN
GAKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVTQVAGDRNPGFNTATIDFNNH
RQLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTPAGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISL
HTAPISSAMLRQAGVLQALQNAVNARR
>Mature_426_residues
SRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQPAVRHSCGAAALATLLKYDCG
IDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIGLRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQDG
RIFIAAPALGNGTLLEEDFAKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPNG
AKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVTQVAGDRNPGFNTATIDFNNHR
QLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTPAGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISLH
TAPISSAMLRQAGVLQALQNAVNARR

Specific function: Unknown

COG id: COG3271

COG function: function code R; Predicted double-glycine peptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45370; Mature: 45238

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: PS50990 PEPTIDASE_C39

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQ
CCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
PAVRHSCGAAALATLLKYDCGIDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIG
CHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHC
LRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQDGRIFIAAPALGNGTLLEEDF
CCCCCEEECCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCCEEHHHH
AKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPN
HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
GAKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVT
CHHHHHHCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QVAGDRNPGFNTATIDFNNHRQLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTP
HHHCCCCCCCCEEEEEECCCEEEEECCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCC
AGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISLHTAPISSAMLRQAGVLQALQ
CCCHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHH
NAVNARR
HHHHCCC
>Mature Secondary Structure 
SRLSHRRRNVAPYPPPCFQLADCVRKCTHRRASTRLPSQVFRLLNGALDEGPALPPYRQ
CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
PAVRHSCGAAALATLLKYDCGIDIPKTDLIRRMMVVSTPEVVVRNGFSMLDMKKSLETIG
CHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHC
LRGRGFRVNTDALYHLQIPVMVLMNLDGYEHFVIVKHAQDGRIFIAAPALGNGTLLEEDF
CCCCCEEECCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCCEEHHHH
AKSMVSCSQSSGNRSGTIPRCCRTTSRWPRGCANLRPKGAGGQIIAGFVLNVLSQWQLPN
HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
GAKALAQGPLSVARDAANALTANVNTLARVTDGHGNPGADPNARPGGRQHIAVNRVLQVT
CHHHHHHCCHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
QVAGDRNPGFNTATIDFNNHRQLVAGGTRAQSAAASNTAGNVKADISLGNGGVTVGRQTP
HHHCCCCCCCCEEEEEECCCEEEEECCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCC
AGIASQTIAPGNAQQAGAIAQLLHIAGNNQQVANQLQISLHTAPISSAMLRQAGVLQALQ
CCCHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHH
NAVNARR
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA