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The map label for this gene is orn [H]

Identifier: 186475543

GI number: 186475543

Start: 873247

End: 873870

Strand: Direct

Name: orn [H]

Synonym: Bphy_0778

Alternate gene names: 186475543

Gene position: 873247-873870 (Clockwise)

Preceding gene: 186475539

Following gene: 186475546

Centisome position: 25.1

GC content: 61.54

Gene sequence:

>624_bases
ATGACTGACATTATCGAATCCGTCGACCAGCCGCTCGCGCGCACCGACATGAATCTCGTCTGGCTCGACATGGAAATGAC
CGGGCTCGATCCCGACAACGACCGCATCATCGAAATCGCCGTGGTCGTGACCAATTCGACGCTCGACAAGATGGTCGAAG
GCCCCGTGCTGGCTATCCACCAGAGCGACGAAACGCTCGGCAAGATGGATGACTGGAACAAGAACACGCATGGCCGTTCG
GGACTGATCGACCGGGTGCGGGCATCGACGGTGACGGAAGCGGACGCCACAGAGCGCATCCGCGCTTTTCTCGGCCAGCA
CGTGCCGCCTGGCAAGTCGCCGATGTGCGGCAACTCGATTTGCCAGGACCGCCGTTTCATGGCGCGCTGGATGCCCGAGC
TGGAAACGTTCTTCCATTACCGCAACCTCGACGTCAGCACGCTGAAGGAACTGTGCCGCCGCTGGCAGCCCGCGATCTAC
AAGGGTTTCCAGAAGCGCGCGATGCATACAGCATTGGCCGATATCCACGAATCGATCGACGAACTCCGCTACTACCGCGA
GCACTTCCTCGTTCCGGCCGCGAGCGCAGCTGACGCGTCGTCCAGCGACGCGAGCGCGCAATAG

Upstream 100 bases:

>100_bases
CAGAGTAGGCATCCGGGGAATCCGTGGGTTCTATGCGAGAATTATATGTTTGTTCCCGCTTGCGGGCGGGAGCGCGCCAT
CCAAATCAGGGTTGCCTTCA

Downstream 100 bases:

>100_bases
GGTTCAGCTTTGCCGCGGAGCGCGCACCGCGTTCTTCGGCCGGAACGCCGTCACGACGGCGGCGTTCGTCTCGATGTAAG
GGCCGCCGATCAGGTCGATG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTDIIESVDQPLARTDMNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIHQSDETLGKMDDWNKNTHGRS
GLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQDRRFMARWMPELETFFHYRNLDVSTLKELCRRWQPAIY
KGFQKRAMHTALADIHESIDELRYYREHFLVPAASAADASSSDASAQ

Sequences:

>Translated_207_residues
MTDIIESVDQPLARTDMNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIHQSDETLGKMDDWNKNTHGRS
GLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQDRRFMARWMPELETFFHYRNLDVSTLKELCRRWQPAIY
KGFQKRAMHTALADIHESIDELRYYREHFLVPAASAADASSSDASAQ
>Mature_206_residues
TDIIESVDQPLARTDMNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIHQSDETLGKMDDWNKNTHGRSG
LIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQDRRFMARWMPELETFFHYRNLDVSTLKELCRRWQPAIYK
GFQKRAMHTALADIHESIDELRYYREHFLVPAASAADASSSDASAQ

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=47.9768786127168, Blast_Score=176, Evalue=2e-44,
Organism=Escherichia coli, GI87082382, Length=173, Percent_Identity=61.271676300578, Blast_Score=235, Evalue=2e-63,
Organism=Caenorhabditis elegans, GI17557752, Length=184, Percent_Identity=43.4782608695652, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6323088, Length=197, Percent_Identity=37.0558375634518, Blast_Score=122, Evalue=3e-29,
Organism=Drosophila melanogaster, GI21355135, Length=176, Percent_Identity=40.9090909090909, Blast_Score=158, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 23467; Mature: 23336

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIIESVDQPLARTDMNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIH
CCHHHHHHCCHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHCCCEEEEE
QSDETLGKMDDWNKNTHGRSGLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSI
CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
CQDRRFMARWMPELETFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESID
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
ELRYYREHFLVPAASAADASSSDASAQ
HHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDIIESVDQPLARTDMNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIH
CHHHHHHCCHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHCCCEEEEE
QSDETLGKMDDWNKNTHGRSGLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSI
CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
CQDRRFMARWMPELETFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESID
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
ELRYYREHFLVPAASAADASSSDASAQ
HHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA