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The map label for this gene is ihfB

Identifier: 186475512

GI number: 186475512

Start: 843982

End: 844305

Strand: Direct

Name: ihfB

Synonym: Bphy_0747

Alternate gene names: 186475512

Gene position: 843982-844305 (Clockwise)

Preceding gene: 186475511

Following gene: 186475513

Centisome position: 24.26

GC content: 59.57

Gene sequence:

>324_bases
ATGACCAAATCGGAATTGGTCGCCCAGCTGGCTACGCGATTTCCGCAACTTGTTCTCAAGGATGCGGATTTCGCGGTGAA
GACGATGCTCGATGCGATGTCGGACGCCTTGGCGAACGGCCATCGCATCGAAATTCGCGGCTTCGGCAGCTTTGGCCTGA
ACCGCCGTCCGTCCCGCGTCGGACGCAACCCGAAGTCGGGTGAAAAAGTGCTGGTGCCTGAGAAGCACGTACCACATTTC
AAGCCTGGCAAGGAGTTGCGCGAGCGCGTCGACCGTAATGCGGGCGAGCCTCTGAAAGCCGATGCCGCGGACGACGATCT
TTGA

Upstream 100 bases:

>100_bases
GACACGAGCTCGGCAGCAAGCGGCACGACGAACCTCGGCGCGCTGCTGAAGGCCAAGCTCGACGGCCAGAACCAGTAAGC
CTTAAGGGGGCTGCTGCAGT

Downstream 100 bases:

>100_bases
GCCGGCTCTGTGAAGTTCTCGCAGTTCCGGTTCGAGTTCGTCGCGGCTAAGCCAGTCACACGGCATTGACCAAAAGAAAA
GCGCCTTTAAGGGGCGCTTT

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRVGRNPKSGEKVLVPEKHVPHF
KPGKELRERVDRNAGEPLKADAADDDL

Sequences:

>Translated_107_residues
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRVGRNPKSGEKVLVPEKHVPHF
KPGKELRERVDRNAGEPLKADAADDDL
>Mature_106_residues
TKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRVGRNPKSGEKVLVPEKHVPHFK
PGKELRERVDRNAGEPLKADAADDDL

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=58.2417582417582, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=35.1648351648352, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_BURP8 (B2JF07)

Other databases:

- EMBL:   CP001043
- RefSeq:   YP_001856982.1
- ProteinModelPortal:   B2JF07
- SMR:   B2JF07
- GeneID:   6242245
- GenomeReviews:   CP001043_GR
- KEGG:   bph:Bphy_0747
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- ProtClustDB:   PRK00199
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11848; Mature: 11717

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRV
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVLVPEKHVPHFKPGKELRERVDRNAGEPLKADAADDDL
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRV
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVLVPEKHVPHFKPGKELRERVDRNAGEPLKADAADDDL
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA