| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is tyrA [H]
Identifier: 186475508
GI number: 186475508
Start: 839013
End: 840017
Strand: Direct
Name: tyrA [H]
Synonym: Bphy_0743
Alternate gene names: 186475508
Gene position: 839013-840017 (Clockwise)
Preceding gene: 186475507
Following gene: 186475509
Centisome position: 24.12
GC content: 66.77
Gene sequence:
>1005_bases ATGCAATCCATGCGCCTCATCGACTACGAGGCGCTTTTTTCTGTGACTGACGTGGCAGCGTTCTCTTTCGACAAACTGGT GATTTTTGGCGTCGGGCTGATCGGTGGCTCGCTCGCGCGCGCATTGCGCGAGCGCGGCGACATCGGTGGCGCGCGACGCG TGATCGGCGTCGGGCGCTCAGCGGCTTCGACTGCGCGGGCGATGGAACTGGGCGTGATCGACGGCAGCGCGGCGTTGACG GACGACGCGGCATTGCGCGACGCGCTCGACGGGGCGGACGTGGTGCTGCTGGCCGCCCCCGTCGCGCAGACGCAACCGCT GCTCGAACGGATTGCGCCGTTTCTGGGTCCGAAGACAATCATCACCGACGCCGGCAGCACCAAGTCCGATGTCGTCGCAG CGGCGCGCGCAGTGCTTGGCGAGCGCATCTGTCAGTTCGTACCGGGACATCCGATAGCGGGCCGCGAATCGAGCGGTGTC GATGCCGCGCTGCCGGACCTGTACGTGAACCGGAACGTCGTGCTGTGCGCGTTGCCGGAGAACGCCGGGGATGACGTCGA GCGTATCGCCGCGATGTGGCGCGCGACGGGCGCGAGTGTGCACGCGATGCCGCCCGAACAGCATGACCGCGTGTTCGCGT CGGTCAGCCATCTGCCTCACGTGTTGTCGTTCGCGCTGGTCGAGCAGATTCTCAATTCATCGGACGCCGAGCTGAAGTTC TCGTTTGCGGCAGGCGGATTCCGCGACTTCACGCGCATCGCCGCGTCGAGCCCGGAAATGTGGCGCGACGTGTGCGTGGC CAATCGTGCCGCGCTGCTGAGCGAAATCGACGACTACACGGCTGTGCTGGCACATCTGAGGTCGGCGATCGACGCTGGCG ACGGCGCGACGCTCGAAGCTGTGTTCGCGCGCTCGCGCACCGCCCGCAGCGCCTGGCAGGAGCGCGCTGCGTCCGCACGT CAGGCATCGCCCGCACGTTCGGCCAACGACGAAGCGTCGAAATAA
Upstream 100 bases:
>100_bases GTCTGCCGCAGTGGTTGCGCGTGACGATCGGCCTGCCCGAAGAAAATGAAGCGTTTATCGCGGCGCTCGAAAAGACCCTG GCGACGGCCTGAGCGGATCC
Downstream 100 bases:
>100_bases AGGACCTTGGAATTCATATATGGAACATCTCGATCTCGGACCATTTTCCCGTGCTTCCGGCACGGTTCGTCTGCCAGGCT CGAAGAGCATTTCGAACCGC
Product: prephenate dehydrogenase
Products: NA
Alternate protein names: PDH [H]
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MQSMRLIDYEALFSVTDVAAFSFDKLVIFGVGLIGGSLARALRERGDIGGARRVIGVGRSAASTARAMELGVIDGSAALT DDAALRDALDGADVVLLAAPVAQTQPLLERIAPFLGPKTIITDAGSTKSDVVAAARAVLGERICQFVPGHPIAGRESSGV DAALPDLYVNRNVVLCALPENAGDDVERIAAMWRATGASVHAMPPEQHDRVFASVSHLPHVLSFALVEQILNSSDAELKF SFAAGGFRDFTRIAASSPEMWRDVCVANRAALLSEIDDYTAVLAHLRSAIDAGDGATLEAVFARSRTARSAWQERAASAR QASPARSANDEASK
Sequences:
>Translated_334_residues MQSMRLIDYEALFSVTDVAAFSFDKLVIFGVGLIGGSLARALRERGDIGGARRVIGVGRSAASTARAMELGVIDGSAALT DDAALRDALDGADVVLLAAPVAQTQPLLERIAPFLGPKTIITDAGSTKSDVVAAARAVLGERICQFVPGHPIAGRESSGV DAALPDLYVNRNVVLCALPENAGDDVERIAAMWRATGASVHAMPPEQHDRVFASVSHLPHVLSFALVEQILNSSDAELKF SFAAGGFRDFTRIAASSPEMWRDVCVANRAALLSEIDDYTAVLAHLRSAIDAGDGATLEAVFARSRTARSAWQERAASAR QASPARSANDEASK >Mature_334_residues MQSMRLIDYEALFSVTDVAAFSFDKLVIFGVGLIGGSLARALRERGDIGGARRVIGVGRSAASTARAMELGVIDGSAALT DDAALRDALDGADVVLLAAPVAQTQPLLERIAPFLGPKTIITDAGSTKSDVVAAARAVLGERICQFVPGHPIAGRESSGV DAALPDLYVNRNVVLCALPENAGDDVERIAAMWRATGASVHAMPPEQHDRVFASVSHLPHVLSFALVEQILNSSDAELKF SFAAGGFRDFTRIAASSPEMWRDVCVANRAALLSEIDDYTAVLAHLRSAIDAGDGATLEAVFARSRTARSAWQERAASAR QASPARSANDEASK
Specific function: Unknown
COG id: COG0287
COG function: function code E; Prephenate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate/arogenate dehydrogenase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR002912 - InterPro: IPR016040 - InterPro: IPR003099 [H]
Pfam domain/function: PF01842 ACT; PF02153 PDH [H]
EC number: =1.3.1.12 [H]
Molecular weight: Translated: 35166; Mature: 35166
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSMRLIDYEALFSVTDVAAFSFDKLVIFGVGLIGGSLARALRERGDIGGARRVIGVGRS CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCH AASTARAMELGVIDGSAALTDDAALRDALDGADVVLLAAPVAQTQPLLERIAPFLGPKTI HHHHHHHHHEEEECCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEE ITDAGSTKSDVVAAARAVLGERICQFVPGHPIAGRESSGVDAALPDLYVNRNVVLCALPE EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEECCCEEEEECCC NAGDDVERIAAMWRATGASVHAMPPEQHDRVFASVSHLPHVLSFALVEQILNSSDAELKF CCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE SFAAGGFRDFTRIAASSPEMWRDVCVANRAALLSEIDDYTAVLAHLRSAIDAGDGATLEA EECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH VFARSRTARSAWQERAASARQASPARSANDEASK HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MQSMRLIDYEALFSVTDVAAFSFDKLVIFGVGLIGGSLARALRERGDIGGARRVIGVGRS CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCH AASTARAMELGVIDGSAALTDDAALRDALDGADVVLLAAPVAQTQPLLERIAPFLGPKTI HHHHHHHHHEEEECCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEE ITDAGSTKSDVVAAARAVLGERICQFVPGHPIAGRESSGVDAALPDLYVNRNVVLCALPE EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEECCCEEEEECCC NAGDDVERIAAMWRATGASVHAMPPEQHDRVFASVSHLPHVLSFALVEQILNSSDAELKF CCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE SFAAGGFRDFTRIAASSPEMWRDVCVANRAALLSEIDDYTAVLAHLRSAIDAGDGATLEA EECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH VFARSRTARSAWQERAASARQASPARSANDEASK HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3106153; 9384377 [H]