| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is gmk [H]
Identifier: 186475435
GI number: 186475435
Start: 754746
End: 755432
Strand: Direct
Name: gmk [H]
Synonym: Bphy_0669
Alternate gene names: 186475435
Gene position: 754746-755432 (Clockwise)
Preceding gene: 186475434
Following gene: 186475436
Centisome position: 21.69
GC content: 61.86
Gene sequence:
>687_bases ATGTCCGAACCTAAAGCCGAAGCCAAGCCCGAACCGAAGCGCAATCCGTACGCAGGTGTTTATCCCGGCAACCTGTTCAT GGTCGTCGCACCGTCGGGCGCGGGCAAGTCGACGCTCGTCAACGCGCTGCTCGCGCGCGACGGAGCGATCCGTCTGTCGA TCTCGTACACCACGCGCCAGCCGCGTCCGAATGAGCAGGACGGCGAGCACTATCACTTCACGACGGTCGAAGACTTCCTG CAGCGGCACGACGCAGGGGAGTTTCTCGAGAGCGCGGAAGTGCACGGCAACTACTACGCGACCTCGCGTGTGTGGATCGA AGAGCAGATGAAAAGCGGCCACGACGTGCTGCTCGAAATCGACTGGCAGGGCGCGCAGCAAGTGAAGAAGCAGTTCCGCA ATGCCGTCGAGATCTTCATTTTGCCGCCGTCGCTCGAAGCACTCGAAGAGCGTTTGAAAAAGCGCGGCCAGGACGAGCCG AATGTGATCACGCGACGTCTGCTCGCAGCGGGCAGCGAGATGGCGCACGCCGCGGAAGCGGAGTATGTCGTGATCAACGA GAACTTCGATCGCGCGCTCGCCGAACTGCAATGCCTCGTGTCGGCCACGCGCTCGCGCTTCGCATCGCAATACGCGCGCC ATACGAACCTCTTCATGCAACTCGGCATTCACTTGCCGCACGCGTGA
Upstream 100 bases:
>100_bases GCCGCGAAAGAACTCGCCGATTCGTCGATGACGCTCAAGCTGCTCATCGAACAGATGCGCGAACAAGTACAAAACCTGGA GTAACGGGAGTCCCACCAGC
Downstream 100 bases:
>100_bases TACGGGCGAGCTCGCAAGGACATAAGGTAGAATAACCAACATACAGAGAAGGAATTTTCAACATGGCCCGCATTACCGTC GAAGACTGTCTGAAACAGAT
Product: guanylate kinase
Products: NA
Alternate protein names: GMP kinase [H]
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MSEPKAEAKPEPKRNPYAGVYPGNLFMVVAPSGAGKSTLVNALLARDGAIRLSISYTTRQPRPNEQDGEHYHFTTVEDFL QRHDAGEFLESAEVHGNYYATSRVWIEEQMKSGHDVLLEIDWQGAQQVKKQFRNAVEIFILPPSLEALEERLKKRGQDEP NVITRRLLAAGSEMAHAAEAEYVVINENFDRALAELQCLVSATRSRFASQYARHTNLFMQLGIHLPHA
Sequences:
>Translated_228_residues MSEPKAEAKPEPKRNPYAGVYPGNLFMVVAPSGAGKSTLVNALLARDGAIRLSISYTTRQPRPNEQDGEHYHFTTVEDFL QRHDAGEFLESAEVHGNYYATSRVWIEEQMKSGHDVLLEIDWQGAQQVKKQFRNAVEIFILPPSLEALEERLKKRGQDEP NVITRRLLAAGSEMAHAAEAEYVVINENFDRALAELQCLVSATRSRFASQYARHTNLFMQLGIHLPHA >Mature_227_residues SEPKAEAKPEPKRNPYAGVYPGNLFMVVAPSGAGKSTLVNALLARDGAIRLSISYTTRQPRPNEQDGEHYHFTTVEDFLQ RHDAGEFLESAEVHGNYYATSRVWIEEQMKSGHDVLLEIDWQGAQQVKKQFRNAVEIFILPPSLEALEERLKKRGQDEPN VITRRLLAAGSEMAHAAEAEYVVINENFDRALAELQCLVSATRSRFASQYARHTNLFMQLGIHLPHA
Specific function: Essential for recycling GMP and indirectly, cGMP [H]
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain [H]
Homologues:
Organism=Homo sapiens, GI226874833, Length=175, Percent_Identity=38.2857142857143, Blast_Score=124, Evalue=6e-29, Organism=Homo sapiens, GI4504221, Length=175, Percent_Identity=38.2857142857143, Blast_Score=124, Evalue=6e-29, Organism=Homo sapiens, GI226874831, Length=175, Percent_Identity=38.2857142857143, Blast_Score=124, Evalue=6e-29, Organism=Homo sapiens, GI21361598, Length=190, Percent_Identity=24.2105263157895, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4505237, Length=173, Percent_Identity=28.3236994219653, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI262118255, Length=173, Percent_Identity=28.3236994219653, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI262118263, Length=173, Percent_Identity=28.3236994219653, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI262118259, Length=173, Percent_Identity=28.3236994219653, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI38570142, Length=179, Percent_Identity=26.8156424581006, Blast_Score=68, Evalue=7e-12, Organism=Escherichia coli, GI1790080, Length=201, Percent_Identity=48.2587064676617, Blast_Score=194, Evalue=3e-51, Organism=Caenorhabditis elegans, GI193203132, Length=184, Percent_Identity=34.7826086956522, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17508835, Length=194, Percent_Identity=33.5051546391753, Blast_Score=109, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6320662, Length=182, Percent_Identity=37.9120879120879, Blast_Score=125, Evalue=4e-30, Organism=Drosophila melanogaster, GI21356141, Length=179, Percent_Identity=35.195530726257, Blast_Score=110, Evalue=9e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 [H]
Pfam domain/function: PF00625 Guanylate_kin [H]
EC number: =2.7.4.8 [H]
Molecular weight: Translated: 25686; Mature: 25555
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00856 GUANYLATE_KINASE_1 ; PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPKAEAKPEPKRNPYAGVYPGNLFMVVAPSGAGKSTLVNALLARDGAIRLSISYTTRQ CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCC PRPNEQDGEHYHFTTVEDFLQRHDAGEFLESAEVHGNYYATSRVWIEEQMKSGHDVLLEI CCCCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCEEEEEE DWQGAQQVKKQFRNAVEIFILPPSLEALEERLKKRGQDEPNVITRRLLAAGSEMAHAAEA CCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCC EYVVINENFDRALAELQCLVSATRSRFASQYARHTNLFMQLGIHLPHA CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SEPKAEAKPEPKRNPYAGVYPGNLFMVVAPSGAGKSTLVNALLARDGAIRLSISYTTRQ CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCC PRPNEQDGEHYHFTTVEDFLQRHDAGEFLESAEVHGNYYATSRVWIEEQMKSGHDVLLEI CCCCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCEEEEEE DWQGAQQVKKQFRNAVEIFILPPSLEALEERLKKRGQDEPNVITRRLLAAGSEMAHAAEA CCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCC EYVVINENFDRALAELQCLVSATRSRFASQYARHTNLFMQLGIHLPHA CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA